CuGenDBv2

Gene ID	CsGy1G016810
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	Gy14Chr1:14132502..14133131
RNA-Seq Expression	CsGy1G016810
Synteny	CsGy1G016810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

Q2QDA6.1 RecName: Full=30S ribosomal protein S16, chloroplastic [Cucumis sativus]

1.07e-42

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

1.04e-42

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009738183.1 ribosomal protein S16 [Siraitia siamensis]

1.10e-42

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_009753071.1 ribosomal protein S16 [Corallocarpus boehmii]

1.21e-42

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

YP_010131076.1 ribosomal protein S16 [Benincasa hispida]

1.53e-42

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1R7 30S ribosomal protein S16, chloroplastic

5.03e-43

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A218KG12 30S ribosomal protein S16, chloroplastic

5.03e-43

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6H0ERN1 30S ribosomal protein S16, chloroplastic

5.03e-43

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

A0A6H0ETM9 30S ribosomal protein S16, chloroplastic

5.03e-43

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

X2F3D0 30S ribosomal protein S16, chloroplastic

5.03e-43

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

8.8e-32

92.86

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q0ZJ38 30S ribosomal protein S16, chloroplastic

5.7e-31

91.43

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+AID RSRREGRDLRKVGFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2L8Y7 30S ribosomal protein S16, chloroplastic

3.0e-32

94.29

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL LNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q2QDA6 30S ribosomal protein S16, chloroplastic

8.5e-35

100

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Q6EW66 30S ribosomal protein S16, chloroplastic

9.7e-31

91.43

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ
        A YRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDI KKA VF EL +NQ
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

6.3e-09

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV

AT5G56940.1 Ribosomal protein S16 family protein

3.2e-05

33.85

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP+  V  +L ++G+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

1.1e-24

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Query:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        AVYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE

Sequences

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CDS sequence

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ATGATTCAAGGCAAGGATAAAGGATCCCGGAACAAAATTCTATACATAACTTTGAATTTCCTCGAGCCGTACGAGGAGAAAACTTCTTATACGGTTCTGGGGGGGGCTGT
TTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGAGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGCGA
TTCTATATTTCCTTGAAAAGGGTGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGTGTTTTTACGGAACTTCACCTTAATCAATAA

mRNA sequence

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Protein sequence

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MIQGKDKGSRNKILYITLNFLEPYEEKTSYTVLGGAVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ

CsGy1G016810 (gene) of Cucumber (Gy14) v2.1 genome