CuGenDBv2

Gene ID	CsGy1G016940
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome location	Gy14Chr1:14358030..14358364
RNA-Seq Expression	CsGy1G016940
Synteny	CsGy1G016940
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domains	IPR029071 - Ubiquitin-like domain superfamily IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]

8.82e-37

97.01

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]

5.64e-37

97.01

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]

1.09e-38

100

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]

2.50e-27

79.1

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]

1.46e-32

86.57

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEP+VPDSCCISPRF SNSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LT94 Ubiquitin_4 domain-containing protein

5.28e-39

100

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1

4.27e-37

97.01

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2

2.73e-37

97.01

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2

2.73e-37

97.01

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like

6.97e-27

77.61

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Query:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVE
Subjt:  MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80060.1 Ubiquitin-like superfamily protein

2.6e-04

44.29

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Query:  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVE-VFSVN
        I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++ AVE VF+++
Subjt:  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVRDAVE-VFSVN

AT4G32270.1 Ubiquitin-like superfamily protein

2.5e-07

56.82

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Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

AT5G25340.1 Ubiquitin-like superfamily protein

4.6e-06

54.55

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Query:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE
        RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E
Subjt:  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVE

Sequences

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CDS sequence

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ATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAG
CTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAAGTGTTTTCT
GTAAATGTCGATGAATAA

mRNA sequence

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Protein sequence

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MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVEVFSVNVDE

CsGy1G016940 (gene) of Cucumber (Gy14) v2.1 genome