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CsGy1G017980 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G017980
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptioneukaryotic translation initiation factor
Genome locationGy14Chr1:16090860..16091655
RNA-Seq ExpressionCsGy1G017980
SyntenyCsGy1G017980
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR003890 - MIF4G-like, type 3
IPR016021 - MIF4G-like domain superfamily
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ95977.1 eukaryotic translation initiation factor [Cucumis melo var. makuwa]2.18e-5660.56Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RV SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

XP_004146671.1 eukaryotic translation initiation factor [Cucumis sativus]4.22e-5761.11Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

XP_008443845.1 PREDICTED: eukaryotic translation initiation factor [Cucumis melo]2.18e-5660.56Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RV SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

XP_022135487.1 eukaryotic translation initiation factor [Momordica charantia]5.03e-5256.91Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDIR---------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDEN KSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDIR---------------------------------------------

Query:  -------------------------VTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                                 V SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPG+DNDNWEVPR+R I RG
Subjt:  -------------------------VTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

XP_038878795.1 eukaryotic translation initiation factor-like [Benincasa hispida]2.79e-5256.11Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNK CPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               R+  GS GNTSPGGFP+NRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRAR + RG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

TrEMBL top hitse value%identityAlignment
A0A0A0LWG6 MI domain-containing protein2.04e-5761.11Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

A0A1S3B918 eukaryotic translation initiation factor1.05e-5660.56Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RV SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

A0A5A7T0H9 Eukaryotic translation initiation factor1.05e-5660.56Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RV SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

A0A5D3BA27 Eukaryotic translation initiation factor1.05e-5660.56Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                               RV SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

A0A6J1C2U4 eukaryotic translation initiation factor2.44e-5256.91Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDIR---------------------------------------------
        MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDEN KSRRIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDIR---------------------------------------------

Query:  -------------------------VTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                                 V SGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPG+DNDNWEVPR+R I RG
Subjt:  -------------------------VTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

SwissProt top hitse value%identityAlignment
Q03387 Eukaryotic translation initiation factor isoform 4G-11.6e-3548.31Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND-----------------------------------------------
        MVPEKIVHHIV+ELLG D K CP EE+VEAICQFFNTIGKQLDEN KSRRIND                                               
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND-----------------------------------------------

Query:  ---------IRVTSGSAGN-----------TSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                 + +  G+  N            SPGGF +NRPG GGMMPGMPG+RKMPGMPG+DNDNWEV R+RS+ RG
Subjt:  ---------IRVTSGSAGN-----------TSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

Q41583 Eukaryotic translation initiation factor isoform 4G-21.6e-3548.31Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND-----------------------------------------------
        MVPEKIVHHIV+ELLG D K CP EE+VEAICQFFNTIGKQLDEN KSRRIND                                               
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND-----------------------------------------------

Query:  ---------IRVTSGSAGN-----------TSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG
                 + +  G+  N            SPGGF +NRPG GGMMPGMPG+RKMPGMPG+DNDNWEV R+RS+ RG
Subjt:  ---------IRVTSGSAGN-----------TSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRG

Q6K641 Eukaryotic translation initiation factor isoform 4G-26.4e-3244.13Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLG ++  CPAEENVEAICQFFNTIGKQLDEN KSRR ND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR
                               R  +G  G  SPG F +N+PG  GM+PGMPG RKMPGMPG+ +D+WEVP +RS  R
Subjt:  -----------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR

Q84PB3 Eukaryotic translation initiation factor isoform 4G-12.5e-3648.94Show/hide
Query:  MVPEKIVHHIVQELL--GPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND---------------------------------------------
        MVPEKIVHHIVQELL  GPD K CP EENVEAICQFFNTIGKQLDEN KSRRIND                                             
Subjt:  MVPEKIVHHIVQELL--GPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRIND---------------------------------------------

Query:  -----------IRVTSGSAGNT-----------SPGGFPINRPGFGGMMPGMPGT------RKMPGMPGMDNDNWEVPRARSITRGQT
                   + +  G+ G T           SPGGFP+NRPG GGMMPGMPGT      RKMPGMPG+DNDNWEVPR++S+ RG +
Subjt:  -----------IRVTSGSAGNT-----------SPGGFPINRPGFGGMMPGMPGT------RKMPGMPGMDNDNWEVPRARSITRGQT

Q93ZT6 Eukaryotic translation initiation factor isoform 4G-17.6e-3346.63Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLG D K CPAEENVEAIC FF TIGKQLD N KS+RIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR
                             R    S G  SPG  +P  RPG GG+MPGMPGTR+MPGMPG+DNDNWEVPR RS++R
Subjt:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR

Arabidopsis top hitse value%identityAlignment
AT1G62410.1 MIF4G domain-containing protein1.6e-0646.3Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI
        M+ EK+V  I Q+LL    + CP+EE + AIC F NT+GK+LD +  S+ +N+I
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI

AT2G24050.1 MIF4G domain-containing protein / MA3 domain-containing protein2.5e-2338.1Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLG D K CPAE +VEA+CQFF TIGKQLD++ +SR IND                                               
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  ---------------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRGQTDLV
                                      SG+A     G   + RPG GGMMPGMPGTR MP    MD D WE+ R RS+ RG    V
Subjt:  ---------------------------RVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRGQTDLV

AT3G60240.2 eukaryotic translation initiation factor 4G4.0e-0546.67Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDEN
        M+ EKI+H  +Q+LLG +    P EEN+EA+C+  +TIG  +D N
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDEN

AT5G57870.1 MIF4G domain-containing protein / MA3 domain-containing protein5.4e-3446.63Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLG D K CPAEENVEAIC FF TIGKQLD N KS+RIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR
                             R    S G  SPG  +P  RPG GG+MPGMPGTR+MPGMPG+DNDNWEVPR RS++R
Subjt:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR

AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein5.4e-3446.63Show/hide
Query:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------
        MVPEKIVHHIVQELLG D K CPAEENVEAIC FF TIGKQLD N KS+RIND+                                              
Subjt:  MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDI----------------------------------------------

Query:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR
                             R    S G  SPG  +P  RPG GG+MPGMPGTR+MPGMPG+DNDNWEVPR RS++R
Subjt:  ---------------------RVTSGSAGNTSPGG-FPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTTTTAGGACCAGATAACAAAACCTGTCCTGCCGAAGAAAATGTCGAGGCAATCTGTCAATTCTTTAACAC
CATAGGTAAGCAGCTAGACGAGAACACTAAATCGCGCCGTATTAATGACATTCGTGTTACGTCTGGTTCTGCCGGCAACACTAGCCCTGGAGGCTTTCCTATCAATCGTC
CTGGTTTTGGGGGCATGATGCCTGGGATGCCTGGAACAAGGAAGATGCCTGGTATGCCAGGTATGGATAATGACAATTGGGAGGTACCTAGGGCTCGTTCTATAACAAGG
GGGCAGACGGATCTGGTATCCAGTATGCTGGACGTGGTCAACCGTTGGTTGGCAAAGCACCAACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTTTTAGGACCAGATAACAAAACCTGTCCTGCCGAAGAAAATGTCGAGGCAATCTGTCAATTCTTTAACAC
CATAGGTAAGCAGCTAGACGAGAACACTAAATCGCGCCGTATTAATGACATTCGTGTTACGTCTGGTTCTGCCGGCAACACTAGCCCTGGAGGCTTTCCTATCAATCGTC
CTGGTTTTGGGGGCATGATGCCTGGGATGCCTGGAACAAGGAAGATGCCTGGTATGCCAGGTATGGATAATGACAATTGGGAGGTACCTAGGGCTCGTTCTATAACAAGG
GGGCAGACGGATCTGGTATCCAGTATGCTGGACGTGGTCAACCGTTGGTTGGCAAAGCACCAACATTAA
Protein sequenceShow/hide protein sequence
MVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDIRVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITR
GQTDLVSSMLDVVNRWLAKHQH