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CsGy1G018060 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G018060
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationGy14Chr1:16161160..16162326
RNA-Seq ExpressionCsGy1G018060
SyntenyCsGy1G018060
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]1.06e-83100Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGALLVVPFCVFLVFSFSKYDSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]8.96e-7491.47Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLNNN   NGRKFGITSAKRTQDSDS   SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]6.14e-5777.17Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHPLL +NNN RKFG TSAKRT DSDS S++     Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]1.68e-5979.53Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DS+FIF G S +PHPLL +NNN RKFG TSAKRT DSDSDS SSTQ    KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]1.68e-6282.54Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMV+SSFIFIG S VP+PL NNN+ RKF ITSAK T+DSDSDS SS    Q KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+E+LL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGA LVVPFCVFLVFSFS+ DSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein5.11e-84100Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGALLVVPFCVFLVFSFSKYDSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

A0A1S3B903 uncharacterized protein LOC1034873294.34e-7491.47Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLNNN   NGRKFGITSAKRTQDSDS   SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNN---NGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS

A0A6J1C0R6 uncharacterized protein LOC1110073015.81e-4870.16Show/hide
Query:  MVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKI
        M DS+FIF G S V   L N NN R F    AKRT DS +    S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKI
Subjt:  MVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKI

Query:  GALLVVPFCVFLVFSFSKYDSDSS
        GA LVVPFCVFL+ SF+K  +DSS
Subjt:  GALLVVPFCVFLVFSFSKYDSDSS

A0A6J1EZT4 uncharacterized protein LOC1114408612.97e-5777.17Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHPLL +NNN RKFG TSAKRT DSDS S++     Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHPLL-NNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

A0A6J1KT82 uncharacterized protein LOC1114980164.22e-5777.17Show/hide
Query:  MAMVDSSFIFIGFSPVPHPL-LNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHPL L+NNN RKFG TSAKRT DSDS S++     Q KFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETED 
Subjt:  MAMVDSSFIFIGFSPVPHPL-LNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein3.8e-2147.01Show/hide
Query:  FIGFSPVPHPLLNNNNGRKF--GITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLV
        F+ F P      N+N  R F  G+T   + +D  S+ ++  +P       ++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KETE+LLKI A LV
Subjt:  FIGFSPVPHPLLNNNNGRKF--GITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLV

Query:  VPFCVFLVFSFSKYDSD
        VP C+FL  SFS   +D
Subjt:  VPFCVFLVFSFSKYDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTAC
ACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCG
GATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTT
TGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
GAGTTTGTTAAGAGTGAAAAATCTAAAATGATAAAACTGCTTAAGAGAAGAGAAGTTAGAGAAAGAAAGCTTTTCGTGCTGTTTAAATTTTAGTGCATATTTTGTAAATA
TTTTCTTCTTTCTGTTTACCATAATTCCTCAATCTGTAATTCCCTTAAAAATTTAATGGTAGAATTCGTACCCCCCCACTTGTTCTCTGTTTCTAATGGAAAAAGGATGC
GGCCGTAATTCATTTCCACAGGCATTCATTTCAGATTTTCCATAACTGTCTTAACTTCAATTGGCAATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCC
CGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAACCAAATC
AATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGA
ATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTTTGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTC
TTCGTAAGTGTATGGATGATGGATTCCCCAAAATGGTTAGAAATAATTTCAATTTGAAAATGGTAGCTAAGCCAAAGTTGCTTTTTTTGGTTAGAAGGGAGATTTTGAAG
AACATGTACAAAATTCATTTACTGATATGCACATGGTTCTTGTTGGTTTCCACTCTCATGTTTTAGAATTTAGTAAGCGTCACACTGTTTAGAAATAGTCATATTCGAAC
AAGAAATGATATCTAGGTGCATACATTCACTTTAGTAGCTTATTGGCTAAAGTCACTATGCGAATAAGCAATCCTAAGTTGGACAACCTTTGGTGAGGTTGGAGTTCGTA
GTATCCATCTTTGTATTGAATCTTCATCTATCAATTAATAGTCTTATAATCCTATATACATTCTTGTAAACAGTC
Protein sequenceShow/hide protein sequence
MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPF
CVFLVFSFSKYDSDSS