; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy1G018740 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G018740
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr1:16934225..16934932
RNA-Seq ExpressionCsGy1G018740
SyntenyCsGy1G018740
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653088.1 hypothetical protein Csa_020070 [Cucumis sativus]1.66e-77100Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQR
        LLDMYAKRGSIQESQR
Subjt:  LLDMYAKRGSIQESQR

TYK26926.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.99e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSKQSQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

XP_004150024.3 pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis sativus]1.51e-7691.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLN DPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSK+SQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

XP_008444010.1 PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis melo]5.99e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSKQSQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

XP_038878735.1 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1 [Benincasa hispida]1.07e-7086.67Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFE MQDASRVF+ELPYREIISWNALISGYAQN LCQEALE FL A+ME KPNEYTFGSVLNAISAGE  I +KHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSK+SQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

TrEMBL top hitse value%identityAlignment
A0A0A0LWF3 Uncharacterized protein3.64e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLN DPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSK+SQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

A0A1S3BA52 pentatricopeptide repeat-containing protein At4g32430, mitochondrial2.90e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSKQSQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

A0A5A7TTA5 Pentatricopeptide repeat-containing protein2.90e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSKQSQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

A0A5D3DTC6 Pentatricopeptide repeat-containing protein2.90e-7791.85Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSKQSQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

A0A6J1CUB6 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X21.90e-7084.44Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFE MQD+SRVFIELPYREIISWNALISGYAQN LCQEALE FL A+ME KPNEYTFGSVLNAISAG+ DI +KHGQRCHSHLIK+GL  DPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LLDMYAKRGSIQESQRVFN+TSK+SQ AWT ++ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

SwissProt top hitse value%identityAlignment
O04659 Pentatricopeptide repeat-containing protein At5g271101.5e-1836.3Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKF   +++ +VF E+P R++ SWN +IS + Q+   ++ALE  L+  ME    E    S+  AISA    + L+ G+  H   +K G   D  ++ A
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        L+DMY K   ++ ++ VF K  ++S +AW +M+KG
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

O23169 Pentatricopeptide repeat-containing protein At4g371709.4e-1829.45Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-----------------------------LYAVMEYKPNEY-TFGSVLNAISAG
        MYAK   + DA +VF E+P R++ SWN +++GYA+  L +EA + F                             LY++M+  PN      +V  A++A 
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-----------------------------LYAVMEYKPNEY-TFGSVLNAISAG

Query:  EEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV
             ++ G+  H H+++ GL+ D ++  +L+DMY K G I E++ +F+K  ++  ++WT+M+
Subjt:  EEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV

Q84MA3 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial3.2e-4260.15Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        +YAKFE ++DA + F ++ +REIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTFGSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S A
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV
        LLDMYAKRG+I ES++VFN+ S+++Q  WT+++
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV

Q9LYV3 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial9.4e-1830.88Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG
        +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T  S+LN  + G+       G++ H  ++KVG + D  +S 
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG

Query:  ALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        AL+D+YAK   +  + ++F + S +++++W T++ G
Subjt:  ALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g276109.4e-1832.59Show/hide
Query:  YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        Y K   +++A++VF  +  ++I++W+A+++GYAQ    + A++ F        KPNE+TF S+LN  +A   +  +  G++ H   IK  L+    +S A
Subjt:  YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LL MYAK+G+I+ ++ VF +  ++  ++W +M+ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

Arabidopsis top hitse value%identityAlignment
AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.7e-1932.59Show/hide
Query:  YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        Y K   +++A++VF  +  ++I++W+A+++GYAQ    + A++ F        KPNE+TF S+LN  +A   +  +  G++ H   IK  L+    +S A
Subjt:  YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        LL MYAK+G+I+ ++ VF +  ++  ++W +M+ G
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein2.3e-4360.15Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        +YAKFE ++DA + F ++ +REIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTFGSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S A
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV
        LLDMYAKRG+I ES++VFN+ S+++Q  WT+++
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV

AT4G37170.1 Pentatricopeptide repeat (PPR) superfamily protein6.7e-1929.45Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-----------------------------LYAVMEYKPNEY-TFGSVLNAISAG
        MYAK   + DA +VF E+P R++ SWN +++GYA+  L +EA + F                             LY++M+  PN      +V  A++A 
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-----------------------------LYAVMEYKPNEY-TFGSVLNAISAG

Query:  EEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV
             ++ G+  H H+++ GL+ D ++  +L+DMY K G I E++ +F+K  ++  ++WT+M+
Subjt:  EEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV

AT5G13230.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.7e-1930.88Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG
        +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T  S+LN  + G+       G++ H  ++KVG + D  +S 
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG

Query:  ALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        AL+D+YAK   +  + ++F + S +++++W T++ G
Subjt:  ALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG

AT5G27110.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-1936.3Show/hide
Query:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKF   +++ +VF E+P R++ SWN +IS + Q+   ++ALE  L+  ME    E    S+  AISA    + L+ G+  H   +K G   D  ++ A
Subjt:  MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG
        L+DMY K   ++ ++ VF K  ++S +AW +M+KG
Subjt:  LLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACAGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAA
AATGCTTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGC
GAAGAAGACATACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTGAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTAT
GCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATAAAACATCCAAACAAAGTCAATTGGCTTGGACTACTATGGTTAAGGGGAGAGGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACAGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAA
AATGCTTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGC
GAAGAAGACATACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTGAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTAT
GCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATAAAACATCCAAACAAAGTCAATTGGCTTGGACTACTATGGTTAAGGGGAGAGGTGGTTGA
Protein sequenceShow/hide protein sequence
MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMY
AKRGSIQESQRVFNKTSKQSQLAWTTMVKGRGG