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CsGy1G019072 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G019072
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr1:17434689..17434966
RNA-Seq ExpressionCsGy1G019072
SyntenyCsGy1G019072
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032606.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.20e-1680Show/hide
Query:  IPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT
        +PTNHPGFSPM  MVAS NLN+DSNWYPDS A N+L NNFNNLFT
Subjt:  IPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT

KAA0066108.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]7.73e-0776.47Show/hide
Query:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF
        MT MVAS +LN+DSNWYPDS A N+LTNNFNN F
Subjt:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF

KAE8637246.1 hypothetical protein CSA_007709, partial [Cucumis sativus]3.70e-59100Show/hide
Query:  MVTDSIETNLNAKIAPNLGILLIVVSIITLPPRTESAQPGCSPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT
        MVTDSIETNLNAKIAPNLGILLIVVSIITLPPRTESAQPGCSPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT
Subjt:  MVTDSIETNLNAKIAPNLGILLIVVSIITLPPRTESAQPGCSPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT

KAE8653228.1 hypothetical protein Csa_023938, partial [Cucumis sativus]6.72e-1775.51Show/hide
Query:  SPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNL
        SP FS IPTNHPGFSPMT MVAS +LN+D+NWY D  A N+LTNNFNNL
Subjt:  SPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNL

XP_008465355.1 PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo]9.76e-0773.53Show/hide
Query:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF
        + TMVAS +LN+DSNWYPDSD  N+LTNNFNN F
Subjt:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF

TrEMBL top hitse value%identityAlignment
A0A1S3CQ60 uncharacterized protein LOC103502987 isoform X14.82e-0773.53Show/hide
Query:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF
        + TMVAS +LN+DSNWYPDSD  N+LTNNFNN F
Subjt:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF

A0A1S3CQ70 uncharacterized protein LOC103502987 isoform X24.73e-0773.53Show/hide
Query:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF
        + TMVAS +LN+DSNWYPDSD  N+LTNNFNN F
Subjt:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-947.01e-0651.67Show/hide
Query:  PRTESAQPGCSP-SFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNL
        PR+ S+  G SP S ++  TN      M+ MVA+L+LNIDSNWYPDS A N+LT++ +NL
Subjt:  PRTESAQPGCSP-SFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNL

A0A5D3CT89 Reverse transcriptase, RNA-dependent DNA polymerase3.74e-0776.47Show/hide
Query:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF
        MT MVAS +LN+DSNWYPDS A N+LTNNFNN F
Subjt:  MTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLF

A0A5D3DC66 Integrase, catalytic core5.79e-1780Show/hide
Query:  IPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT
        +PTNHPGFSPM  MVAS NLN+DSNWYPDS A N+L NNFNNLFT
Subjt:  IPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACTGATTCAATAGAAACAAACCTTAATGCGAAAATTGCACCAAATTTGGGCATACTGCTGATTGTTGTTTCAATCATTACCCTACCTCCTCGAACAGAATCCGC
TCAACCAGGTTGTTCCCCTAGTTTTTCTTCAATACCTACTAATCATCCTGGTTTTTCTCCTATGACAACTATGGTTGCATCCCTTAATTTGAATATAGACAGCAACTGGT
ATCCTGACTCTGACGCTAGAAATTACCTCACAAATAATTTCAACAATCTTTTCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGACTGATTCAATAGAAACAAACCTTAATGCGAAAATTGCACCAAATTTGGGCATACTGCTGATTGTTGTTTCAATCATTACCCTACCTCCTCGAACAGAATCCGC
TCAACCAGGTTGTTCCCCTAGTTTTTCTTCAATACCTACTAATCATCCTGGTTTTTCTCCTATGACAACTATGGTTGCATCCCTTAATTTGAATATAGACAGCAACTGGT
ATCCTGACTCTGACGCTAGAAATTACCTCACAAATAATTTCAACAATCTTTTCACTAG
Protein sequenceShow/hide protein sequence
MVTDSIETNLNAKIAPNLGILLIVVSIITLPPRTESAQPGCSPSFSSIPTNHPGFSPMTTMVASLNLNIDSNWYPDSDARNYLTNNFNNLFTX