; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy1G021760 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G021760
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDUF4228 domain-containing protein
Genome locationGy14Chr1:20450616..20451495
RNA-Seq ExpressionCsGy1G021760
SyntenyCsGy1G021760
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583958.1 hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]9.97e-9678.68Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAA-HDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSSAA  D ASALPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAA-HDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP

Query:  R-----RRKKR----EYSNNHHRTTTAASTASAVPDT-------TTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        R     RRKKR       NNHH   T  + ASA  D+         NSISM+NLLVSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPSD+
Subjt:  R-----RRKKR----EYSNNHHRTTTAASTASAVPDT-------TTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

KGN65978.2 hypothetical protein Csa_019723 [Cucumis sativus]1.31e-124100Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_004150211.1 uncharacterized protein LOC101205379 [Cucumis sativus]1.22e-124100Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_008443296.1 PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo]1.41e-11795.63Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS AAHDAAS+LPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP

Query:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRRKKRE+SNNHHRT T ASTASAVPDTTTN+  ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

XP_038894960.1 uncharacterized protein LOC120083324 [Benincasa hispida]4.58e-10085.41Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPP---DPD
        MKNSIRCCISCILPCG LDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSS AAHDAA+A PKIVIVPPEADLQRGKIYFLMPLPP   +PD
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPP---DPD

Query:  KPRRRKKREYSNN--HHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        KPRRRKKR+ +NN  HH   T A+ ++AVP+   N+ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  KPRRRKKREYSNN--HHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

TrEMBL top hitse value%identityAlignment
A0A0A0M094 Uncharacterized protein5.92e-125100Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A1S3B8G2 uncharacterized protein LOC1034869136.80e-11895.63Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS AAHDAAS+LPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP

Query:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRRKKRE+SNNHHRT T ASTASAVPDTTTN+  ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A5A7UMG1 DUF4228 domain-containing protein6.80e-11895.63Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS AAHDAAS+LPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS-AAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP

Query:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        RRRKKRE+SNNHHRT T ASTASAVPDTTTN+  ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
Subjt:  RRRKKREYSNNHHRTTTAASTASAVPDTTTNS--ISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A6J1KLR7 rhoGEF domain-containing protein gxcI-like1.16e-9277.89Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAA-HDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSSAA  D ASALPKIVIVPPEADLQRGKIYFLMPLPP+PDKP
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAA-HDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKP

Query:  R-----RRKKR----EYSNNHHRTTTA-ASTASAVPDTTTN--------SISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI
        R     RRKKR       NNHH   T  A+ ASA  DT  N        SISM+NL VSD YLSEILS+KASTHRERRRGRVGVWRPHL+SICESPS +
Subjt:  R-----RRKKR----EYSNNHHRTTTA-ASTASAVPDTTTN--------SISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI

A0A6P5WYR0 ELMO domain-containing protein F-like6.90e-7464.55Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        MKN+IRCCISCILPCGALDVIRI+HSNG VEEI+GSIKAS++MKAHPKHVLKKPSSPS          +PKIVIVPP+A+LQRGKIYFLMP+P  P+K R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  ----------RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSD
                  RR   + SNN++  + + S ++A  +   N+ISMTNLL+SD YLSEILS+K ST R+RRRGRVGVWRPHL+SI E+P+D
Subjt:  ----------RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein9.3e-2941.44Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        M NS+RCC++C+LPCGALD+IRIVH NGYVEEIT SI A ++++A+P HVL KP S            + KI+I+ PE++L+RG IYFL+P    P+K R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKAS--THRERRR----GRVGVWRPHLQSICE
        RRK       + +  +A +    +            + + + YL E++S  ++   HR RRR      V  WRP L SI E
Subjt:  RRKKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKAS--THRERRR----GRVGVWRPHLQSICE

AT1G29195.1 unknown protein4.4e-4755.32Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDP----
        MK +IRCCI+CILPCGALDVIRIVHSNG+VEEI+G+I AS++MKAHPKHVLKKPSSP+S        +  KIVIVPPEA+LQRGKIYFLMP         
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDP----

Query:  -DKPRRR--------KKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICE
          K RR         KKR      HR            D    +     L+ SD YL+EILS+K +T ++RR+GRVGVWRPHL+SI E
Subjt:  -DKPRRR--------KKREYSNNHHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICE

AT2G30230.1 unknown protein1.0e-2738.25Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR
        M NS+RCC++C+LPCGALD+IRIVH NG+V+EIT  + A ++++A+P HVL KP S            + KI+I+ PE++L+RG IYFL+P    P+K +
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR

Query:  RRKKREYSNNHHRTTTA----ASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRR----GRVGVWRPHLQSICE
         +K++E         +     +   S   D   + +++    + D  LSE +S     +R RR+      V  WRPHL SI E
Subjt:  RRKKREYSNNHHRTTTA----ASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRR----GRVGVWRPHLQSICE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAATAGCATAAGATGCTGCATATCCTGCATTCTTCCTTGCGGAGCTCTTGATGTAATTCGCATAGTCCACTCCAATGGCTACGTCGAAGAAATCACCGGCTCCAT
CAAAGCTTCCGATGTCATGAAAGCCCATCCTAAACACGTCCTTAAAAAGCCCTCCTCCCCTTCCTCCTCCGCCGCTCACGACGCCGCCTCTGCCCTCCCCAAGATCGTCA
TCGTCCCACCCGAAGCTGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCCGACCCCGACAAGCCCCGCCGAAGAAAGAAGAGAGAATATTCCAATAAT
CATCATCGAACAACAACCGCCGCCTCCACCGCCTCCGCCGTACCCGACACCACCACCAACAGCATTTCCATGACTAATCTCCTCGTTTCCGATCACTACCTCTCCGAAAT
ACTCTCCGACAAAGCTTCCACCCACCGCGAACGGCGGCGCGGCCGTGTCGGTGTCTGGAGACCTCACTTACAAAGCATTTGTGAATCACCCAGTGATATCTAA
mRNA sequenceShow/hide mRNA sequence
CAAAATATAAAACAAAAACCAAATAAAAGAAGAATGAAAAAACGAAAAAACGAAGAGAGATCAAGAAGAAAATGAAGAACAACTACTTTCTCTCTCTCCATCTCTCTCCC
TTCTCTCTTCCTCTCCCATATTTCAATATTTCATTAATCTCTCTCTCCTCCAATACACAAAACAAACTCAAAATTTAAATTTAAAATTTTTTGCTTTCTTTTTCCTTTTT
TTGTATTAAGGCAATGAAAAATAGCATAAGATGCTGCATATCCTGCATTCTTCCTTGCGGAGCTCTTGATGTAATTCGCATAGTCCACTCCAATGGCTACGTCGAAGAAA
TCACCGGCTCCATCAAAGCTTCCGATGTCATGAAAGCCCATCCTAAACACGTCCTTAAAAAGCCCTCCTCCCCTTCCTCCTCCGCCGCTCACGACGCCGCCTCTGCCCTC
CCCAAGATCGTCATCGTCCCACCCGAAGCTGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCCGACCCCGACAAGCCCCGCCGAAGAAAGAAGAGAGA
ATATTCCAATAATCATCATCGAACAACAACCGCCGCCTCCACCGCCTCCGCCGTACCCGACACCACCACCAACAGCATTTCCATGACTAATCTCCTCGTTTCCGATCACT
ACCTCTCCGAAATACTCTCCGACAAAGCTTCCACCCACCGCGAACGGCGGCGCGGCCGTGTCGGTGTCTGGAGACCTCACTTACAAAGCATTTGTGAATCACCCAGTGAT
ATCTAAAAAAAAACGGCTATTCAGGTTGTGGGTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTAAACATAAATATATATATCATCATAATTAAATTC
Protein sequenceShow/hide protein sequence
MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSSAAHDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPRRRKKREYSNN
HHRTTTAASTASAVPDTTTNSISMTNLLVSDHYLSEILSDKASTHRERRRGRVGVWRPHLQSICESPSDI