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CsGy1G024473 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G024473
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description30-kDa cleavage and polyadenylation specificity factor 30
Genome locationGy14Chr1:23326819..23327022
RNA-Seq ExpressionCsGy1G024473
SyntenyCsGy1G024473
Gene Ontology termsGO:0000381 - regulation of alternative mRNA splicing, via spliceosome (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:1990247 - N6-methyladenosine-containing RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653312.1 hypothetical protein Csa_023330 [Cucumis sativus]1.70e-3798.51Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

KAG6573397.1 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucurbita argyrosperma subsp. sororia]4.48e-2890.77Show/hide
Query:  GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        GSGHD+ MQYKQGSKAYPD+QYGMGTT RNEESESE+EAPRRSRHGEGKKKRRGSEGDA+AISDQ
Subjt:  GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

XP_008445183.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo]4.60e-3194.03Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGDA+AISDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

XP_011648522.2 LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucumis sativus]7.79e-3398.51Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

XP_022140120.1 30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]3.28e-2886.57Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        M GSGHD+ MQYKQGSKAYPD+QYG+GTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGDA+ +SDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LVW1 Uncharacterized protein1.17e-2898.18Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR
        MLGSGHDEGMQYK GSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRR

A0A1S3BC28 30-kDa cleavage and polyadenylation specificity factor 302.23e-3194.03Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGDA+AISDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

A0A5D3C2W1 30-kDa cleavage and polyadenylation specificity factor 302.23e-3194.03Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        ML SGHDEGMQYKQGSKAYPD+QYGMGTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGDA+AISDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

A0A6J1CE78 30-kDa cleavage and polyadenylation specificity factor 301.59e-2886.57Show/hide
Query:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        M GSGHD+ MQYKQGSKAYPD+QYG+GTTFRNEESESE+EAPRRSRHGEGKKKRRGSEGDA+ +SDQ
Subjt:  MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

A0A6J1JWQ9 30-kDa cleavage and polyadenylation specificity factor 30-like1.03e-2789.23Show/hide
Query:  GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ
        GSGHD+ MQYKQGSKAYPD+QYGMGT  RNEESESE+EAPRRSRHGEGKKKRRGSEGDA+AISDQ
Subjt:  GSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ

SwissProt top hitse value%identityAlignment
A9LNK9 30-kDa cleavage and polyadenylation specificity factor 306.5e-0468.57Show/hide
Query:  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR
        +Q+ +G + RNEESES  E+EAPRRSRHGEGKK+R
Subjt:  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR

Arabidopsis top hitse value%identityAlignment
AT1G30460.1 cleavage and polyadenylation specificity factor 304.6e-0568.57Show/hide
Query:  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR
        +Q+ +G + RNEESES  E+EAPRRSRHGEGKK+R
Subjt:  DQYGMGTTFRNEESES--ENEAPRRSRHGEGKKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGTAGTGGACACGATGAAGGAATGCAATATAAGCAGGGATCAAAAGCTTATCCTGATGATCAATATGGAATGGGAACAACCTTTAGGAATGAGGAAAGTGAAAG
TGAGAACGAGGCACCTCGGCGATCAAGGCATGGAGAGGGGAAGAAGAAGCGGAGAGGTTCAGAAGGAGATGCCTCTGCAATCTCTGATCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGTAGTGGACACGATGAAGGAATGCAATATAAGCAGGGATCAAAAGCTTATCCTGATGATCAATATGGAATGGGAACAACCTTTAGGAATGAGGAAAGTGAAAG
TGAGAACGAGGCACCTCGGCGATCAAGGCATGGAGAGGGGAAGAAGAAGCGGAGAGGTTCAGAAGGAGATGCCTCTGCAATCTCTGATCAGTGA
Protein sequenceShow/hide protein sequence
MLGSGHDEGMQYKQGSKAYPDDQYGMGTTFRNEESESENEAPRRSRHGEGKKKRRGSEGDASAISDQ