CuGenDBv2

Gene ID	CsGy1G024477
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	30-kDa cleavage and polyadenylation specificity factor 30
Genome location	Gy14Chr1:23327107..23327520
RNA-Seq Expression	CsGy1G024477
Synteny	CsGy1G024477
Gene Ontology terms	GO:0000381 - regulation of alternative mRNA splicing, via spliceosome (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:1990247 - N6-methyladenosine-containing RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8653313.1 hypothetical protein Csa_023309 [Cucumis sativus]

1.17e-86

94.89

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPRFSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

XP_008445183.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo]

2.07e-82

93.43

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMFTPGGFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPP  PSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

XP_011648522.2 LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30, partial [Cucumis sativus]

9.50e-85

94.89

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPRFSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

XP_022140120.1 30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia]

4.22e-76

86.86

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMF PGGFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTG +PARPGRPV VS LYPPP  P +QN+N
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

XP_038894441.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida]

5.26e-78

88.32

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQ  PPGM+GPDGLSYGPVT +GFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMF+P GFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGT+PARPGRPVGVSPLYPPP  PS QNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSR6 Uncharacterized protein

8.99e-74

84.17

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGP--RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGR
        MWPPHMPMGRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGM P GFGPYGP  RFSGDFMGP +AM F GRPSQP AMF P GFGMMMGQGR
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGP--RFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGR

Query:  CPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
         PFMGGMGV G +PARPGRPVGVSPLYPPP  PS+QN+N
Subjt:  CPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

A0A0A0LY24 Uncharacterized protein

1.42e-86

94.89

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MW PHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVTADGFP+PDIFGMAPCGFGPYGPRFSGDFMGPSSAM F GRPSQPGAMFTPG FGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

A0A1S3BC28 30-kDa cleavage and polyadenylation specificity factor 30

1.00e-82

93.43

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMFTPGGFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPP  PSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

A0A5D3C2W1 30-kDa cleavage and polyadenylation specificity factor 30

1.00e-82

93.43

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQS PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMFTPGGFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTGTSPARPGRPVGVSPLYPPP  PSAQNIN
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

A0A6J1CE78 30-kDa cleavage and polyadenylation specificity factor 30

2.04e-76

86.86

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP
        MWPPHMPMGRGARPFHGMQ  PPGMMGPDGLSYGPVT DGFPMPDIFGMAP GFGPYGPRFSGDFMGP SAM F GRPSQPGAMF PGGFGMMMGQGR P
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCP

Query:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN
        FMGGMGVTG +PARPGRPV VS LYPPP  P +QN+N
Subjt:  FMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQNIN

SwissProt top hits

e value

%identity

Alignment

A9LNK9 30-kDa cleavage and polyadenylation specificity factor 30

2.1e-25

53.33

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRC
        MWPP MP+GRG RP  GM   P G+MGP D   YGP   +G  MPD FGM P  FGPYGPRF GDF GP   M F GRP Q    F  GG+G MMG GR 
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRC

Query:  PFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ
        P MGGMG           P G  P+Y PP   SA+
Subjt:  PFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ

Q0DA50 Zinc finger CCCH domain-containing protein 45

1.3e-27

55.22

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Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFM--GPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGR
        MWPP MPM RG  P  G +  PP M+G DG  +G     GF MPD FG+ P GF P+GPRF GDF   GP   M F GRP QPG MF P G  MMMG GR
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFM--GPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGR

Query:  CPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPS
         P MGG+G+ G  P RP RPVG++P  PPP  P+
Subjt:  CPFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPS

Arabidopsis top hits

e value

%identity

Alignment

AT1G30460.1 cleavage and polyadenylation specificity factor 30

1.5e-26

53.33

Show/hide

Query:  MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRC
        MWPP MP+GRG RP  GM   P G+MGP D   YGP   +G  MPD FGM P  FGPYGPRF GDF GP   M F GRP Q    F  GG+G MMG GR 
Subjt:  MWPPHMPMGRGARPFHGMQSLPPGMMGP-DGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRC

Query:  PFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ
        P MGGMG           P G  P+Y PP   SA+
Subjt:  PFMGGMGVTGTSPARPGRPVGVSPLYPPPTGPSAQ

Sequences

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CDS sequence

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ATGTGGCCCCCACATATGCCAATGGGACGTGGTGCCAGACCCTTCCATGGAATGCAAAGTTTACCACCTGGGATGATGGGTCCGGATGGTTTGTCTTATGGGCCTGTTAC
GGCCGATGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTTGTGGTTTTGGTCCATATGGTCCTAGGTTTTCCGGTGATTTCATGGGTCCCTCATCTGCTATGACGT
TTTGCGGACGACCTTCTCAACCTGGGGCCATGTTCACCCCTGGTGGGTTTGGGATGATGATGGGACAAGGACGTTGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACT
AGCCCAGCTCGACCTGGTCGTCCTGTGGGTGTTTCTCCATTGTATCCACCTCCAACAGGACCCTCAGCTCAGAACATCAATTGA

mRNA sequence

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Protein sequence

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MWPPHMPMGRGARPFHGMQSLPPGMMGPDGLSYGPVTADGFPMPDIFGMAPCGFGPYGPRFSGDFMGPSSAMTFCGRPSQPGAMFTPGGFGMMMGQGRCPFMGGMGVTGT
SPARPGRPVGVSPLYPPPTGPSAQNIN

CsGy1G024477 (gene) of Cucumber (Gy14) v2.1 genome