; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy1G024900 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G024900
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionzinc finger CCCH domain-containing protein 3
Genome locationGy14Chr1:23894233..23899849
RNA-Seq ExpressionCsGy1G024900
SyntenyCsGy1G024900
Gene Ontology termsGO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013085 - U1-C, C2H2-type zinc finger
IPR036236 - Zinc finger C2H2 superfamily
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135569.1 zinc finger CCCH domain-containing protein 3 [Cucumis sativus]4.72e-6998.96Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPM 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

XP_008450521.1 PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo]1.22e-6291.75Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV
        MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV

XP_022931617.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata]1.70e-4473.96Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+F    R+CNRFL+TGFCQYGDSC YFH NNN      SSS+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

XP_022989487.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima]1.70e-4476.04Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+CNRFL+TGFCQYGDSCKYFH  NN      SSS P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

XP_038879279.1 zinc finger CCCH domain-containing protein 3 [Benincasa hispida]1.09e-5180.61Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNN--NDNTYNSSSYPMV
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ   H+F  RP  CNRFL+TGFCQYGDSCKYFHPNNN  N+NT+NS+S+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNN--NDNTYNSSSYPMV

TrEMBL top hitse value%identityAlignment
A0A0A0M1B0 C3H1-type domain-containing protein2.29e-6998.96Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPM 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

A0A1S3BQ25 zinc finger CCCH domain-containing protein 35.92e-6391.75Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV
        MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV

A0A5D3CFN3 Zinc finger CCCH domain-containing protein 35.92e-6391.75Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV
        MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKD NQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNT+NSSS+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTYNSSSYPMV

A0A6J1EU59 zinc finger CCCH domain-containing protein 38.23e-4573.96Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+D NQ   H+F    R+CNRFL+TGFCQYGDSC YFH NNN      SSS+P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

A0A6J1JFY8 zinc finger CCCH domain-containing protein 3 isoform X18.23e-4576.04Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV
        MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ  P S  F  R+CNRFL+TGFCQYGDSCKYFH  NN      SSS P+ 
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMV

SwissProt top hitse value%identityAlignment
Q0JP11 Zinc finger CCCH domain-containing protein 38.1e-2046.67Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DFNQSFPHSFHFRP-----RICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNS
        MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +           P   H +P      +C  F+ TG C++GDSC+YFHP     N   +
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK-----DFNQSFPHSFHFRP-----RICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNS

Query:  SSYPM
         S P+
Subjt:  SSYPM

Q2TA39 Zinc finger matrin-type protein 58.7e-1445.33Show/hide
Query:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH
        +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+D         + RP  C +FL TG C +G +C++ H
Subjt:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH

Q6AXL8 Zinc finger matrin-type protein 55.6e-1341.33Show/hide
Query:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH
        +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+D       +      +C +F+ TG C +G SC++ H
Subjt:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH

Q9CQR5 Zinc finger matrin-type protein 51.9e-1344Show/hide
Query:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH
        +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL TG C +G +C++ H
Subjt:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH

Q9UDW3 Zinc finger matrin-type protein 51.9e-1344Show/hide
Query:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH
        +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+D         + RP  C +FL TG C +G +C++ H
Subjt:  KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFH

Arabidopsis top hitse value%identityAlignment
AT1G01350.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein8.4e-0451.85Show/hide
Query:  FHFRPRICNRFLSTGFCQYGDSCKYFH
        F ++P IC  +  TG+C YGDSCK+ H
Subjt:  FHFRPRICNRFLSTGFCQYGDSCKYFH

AT5G06420.1 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein8.4e-0451.85Show/hide
Query:  FHFRPRICNRFLSTGFCQYGDSCKYFH
        F ++P IC  +  TG+C YGDSCK+ H
Subjt:  FHFRPRICNRFLSTGFCQYGDSCKYFH

AT5G06420.2 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein8.4e-0451.85Show/hide
Query:  FHFRPRICNRFLSTGFCQYGDSCKYFH
        F ++P IC  +  TG+C YGDSCK+ H
Subjt:  FHFRPRICNRFLSTGFCQYGDSCKYFH

AT5G26749.1 C2H2 and C2HC zinc fingers superfamily protein8.6e-2556.82Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-ICNRFLSTGFCQYGDSCKYFHPNNNNDNT
        MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +CNRF+++ FC +GDSC+YFHPNNN  +T
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-ICNRFLSTGFCQYGDSCKYFHPNNNNDNT

AT5G26749.2 C2H2 and C2HC zinc fingers superfamily protein2.6e-2146.73Show/hide
Query:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-ICNRFLST-------------------GFCQYGDSCKYFHP
        MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S    +   P   +F  + +CNRF+++                    FC +GDSC+YFHP
Subjt:  MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPR-ICNRFLST-------------------GFCQYGDSCKYFHP

Query:  NNNNDNT
        NNN  +T
Subjt:  NNNNDNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTGGGAAAATATTATTGCGACTACTGCGATAAGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCT
TTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATT
CTTGTAAATATTTTCACCCCAATAACAACAATGACAATACGTACAACTCCAGTTCCTACCCTATGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGAT
TTGTAG
mRNA sequenceShow/hide mRNA sequence
CAAAGACGTTTAATACCAATTTATACCTAAAAAAAATGAGGTATAAAGAAAAACAAATAGAATTTAGAAATTGTGGGGGAAAAAGCATAAGATAGATTGGAGGAGAAATT
GATCGGAAACAGAAAGGCTTTAAAGAAAGCTTTGGAACGACGAAGAAGAAGGCTGAAGGAATCGAAGAAGAAGATGCCATTGGGAAAATATTATTGCGACTACTGCGATA
AGCAATTTCAAGACACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCTCATCAGAAGGCCAAAGCTCTTTGGTTCGACTCCTTCAAAGATTTCAATCAATCTTTC
CCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGCGATTCTTGTAAATATTTTCACCCCAATAACAACAATGACAA
TACGTACAACTCCAGTTCCTACCCTATGGTTTCCCGGAAAATTATCAACCCCCAAATGTTCCGGTTAATCGATTTGTAGACGGCAACTCTTCTTCCACAGGTAGTTTAAT
TAGCGATAGACTGGGAACATCATGGGGAAATTTACCTCCATCACTGATGCCTCCTCCAGACGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCAAGA
TCAGCTATTTGTTCAACTCTCATCAGTTCTCTGGTTTCTGGGATGTGCTACTCTATTTATGCGGAAATTTTGTACAAATTTGTTGTCTTCAACATCGAGCAAATGTGCTT
TTCTCTTGTTCCCCCTTCGGGTGCCAACTAGCCCTCAAATTTCAACAGATGCTGATATGTGATATATTAACATTTGTATTTGGTAAAAGAGAAGCAATCTGCAGAAAAGC
AACTCAAGCAAGAAGGTATTCCTTAAAGTTCTAACAGTCAGTAATTGACGGTAGTATATTTGTCCCAAGAAAAAACAAATCCAGGTACCTCTCGTGCACGTGATACTTCA
CCGTCCTCCAGTACAATTGGTACTTTCTGCAGCAGACAAAAGTAATAACAAATAATCAACCTCCCAGAAGAAATAGACCCTCAAGCAAACTAAACTCCAGAGACTGGGAG
TTCCAATTTTATCAGATGTCCCCGAAAGGACCTCCGGAGACTAGGAGATAATACATATTAAGCAAATTATCTACCTGAGGCTTCCATCCCATTTCATCAGGACATCGAAA
AGTGGCTTCATTAAAGGCTTGGCGTTCGATAGCAAATCTTGAAGCACCACTATTCACTCCCAAGTGAAGCTGAAGGAAGAACAGTAACAATTTCTGAGTCATCACTCAGA
ACAGTAACGAGGATAACAATATTAAGTTATTAACATGATGCAAGGCCCAAACTTGCACAAGTTCTGCTTTAAGGTTTGCTGTTTCTCTTCTCAATAATCACAGTCAAGTG
AGGAAATGGCAAATGAAGACAGCTAAATGCTTCCTGAACTTGATGATCTGTATTTCAGAATTATGATACACATATCTAAATTGTTTAAGACGTCGATTCCATTTATATGA
TTTTATATAAAACCAACTTTTTTCCTAGTATTTTCCTTGTTGTGTCATGTGTGTATGTTCTATTTGTCTTCTCAACTGACTGAAACATTAACATGGTTTTTTACCTTATA
ATAGTCCTCCTGTGCAAAATACCTAACCAGATTTCATAAGAAAAGTGAATCATGATCTACAACAGAGCCCCCAATACTAAACTAGGCTATATCACTCGATGGTTAAGTGG
CTGTTCATTTTCTTCTCTATGCACTTACGATTGTAGAGACACTGAAGTTATAATGATATAGACTAATTTGTTTTGATGCTTTAGACAACAATACACTTGGGAGGTTTCTC
AGACGAAGATCGAAAGCTTTGTAAAAAAATAAAGGAAAGTTAAACCATAACAAAAGGAAGTAGTGTATCCTCCGAGTAATTTCTGTTGTAGCTTTGATTATCCAGTTTCA
GAAACTAACACGAAAAGAACTAATGACAAGCAGATCATAACTTGTAGTGGCACATACAATAAGAGTAGCTAGATAAAATGGAAGGCAACTTCAGAGATAAGCAAAACAGG
AAATAAGTCTTATGTAGAGGAAGGTTTGAGCTAGGGGCAGGAATAACTGACCCAGATGATTCTTCTAGAATTGGTAGGTTCAGAACCCTTCCCCTCTACAGCAGATTGCA
ACGTCTTATGTAGCAAATCTAGAGCTCCCTGCCCCGCAGTCTCAAGAATGCTGCAACTCCCAATAGTTAGACCTTCTGGCAAACCATTCTTCTCCATATACTTCTTGAGA
TTGTTCACTATTGTCTCAGTTGGATTATCAGAAACCCCATGGAACTTCTTAAACCCTGTTACATGAATCGTAACTGATGGAGGCCCTTCCGACCCCATTTAACAAAGATC
TCTTCTTGGTAACAGTACTGCTACAGAGAGAATTGTCCCCAACAATCTGCAAGATATGAACACAAGTGATTAACTTGTTGCAACTGAAACTAAAACTCTCAGCAGAAACA
ATCTTTTTCTTTACACTTCATACTCCCCAACACCAAAATCTCATTCTATTATCCATCCTTTTCTCTTAGACAAGGATTAGAACAACAAAAAATTACACAACACTAGCTCA
CTAATATTGTACTGTTAACAACAAATTTCTGAAACCATAAACAGCATATCCAGCCCCCGCTTCACTAGTTGTGTACACAAACTCAAAAAAGAAAACAAAGAATGGAAGTT
ACACCAGAGTAACAGCAGCAATTTCCACTGAAATACCTCAGAAATCAAACAAATCGAGAAGGGAAAATGAAAAAAAATAAATAAATAAATAAACCCAGTTCATAAAACTG
CATGACAATAGAATAATAGTAATGATCCCATGTAAAAGTTGAAGAATACAGAAACCGAACCATCCCGCAGATTCATGAAAACTCAAGGAAAAAGAGGAATTAATTCCCGA
TCGAGATGCTAAGTTTTTTTCTTTTTTTTTTTGTTTAAAATTTTAAAATGGAACAGAATCAAAAACCCCAAAACGATCAGAAACAACAATAATTAAAAAATCTAACTTGG
AACAGAAATGGAAAATAAAGAAATGGGTTCAACAAAAAGAGGAGAAAAAAGAAAAATCCTGAGAAGGGAAAGAAAATTTAGACGTGTTTACCTGTAACGA
Protein sequenceShow/hide protein sequence
MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSYPMVSRKIINPQMFRLID
L