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CsGy1G030370 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G030370
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description60S ribosomal protein L10a
Genome locationGy14Chr1:28651898..28652215
RNA-Seq ExpressionCsGy1G030370
SyntenyCsGy1G030370
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR023674 - Ribosomal protein L1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033405.1 60S ribosomal protein L10a [Cucumis melo var. makuwa]1.98e-4093.24Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

KAE8653536.1 hypothetical protein Csa_007457 [Cucumis sativus]2.76e-50100Show/hide
Query:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEERR
        MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEERR
Subjt:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEERR

XP_008458587.1 PREDICTED: 60S ribosomal protein L10a [Cucumis melo]7.24e-4193.24Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

XP_031736021.1 60S ribosomal protein L10a-like [Cucumis sativus]9.82e-49100Show/hide
Query:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
Subjt:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

XP_038893874.1 60S ribosomal protein L10a [Benincasa hispida]2.36e-3990.54Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEW8 Ribosomal protein3.51e-4193.24Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A0A0M0B3 Uncharacterized protein4.48e-49100Show/hide
Query:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
Subjt:  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A1S3C7Q8 Ribosomal protein3.51e-4193.24Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A5A7SW61 60S ribosomal protein L10a9.59e-4193.24Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SHVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

A0A5A7T1H8 Ribosomal protein1.62e-3989.19Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD SH+EE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

SwissProt top hitse value%identityAlignment
B7F845 60S ribosomal protein L10a9.8e-2875.68Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPKMK+C+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

B8B9K6 60S ribosomal protein L10a9.8e-2875.68Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPKMK+C+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

P59230 60S ribosomal protein L10a-22.8e-2777.03Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

P59231 60S ribosomal protein L10a-33.1e-2677.33Show/hide
Query:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

Q8VZB9 60S ribosomal protein L10a-18.3e-2777.03Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

Arabidopsis top hitse value%identityAlignment
AT1G08360.1 Ribosomal protein L1p/L10e family5.9e-2877.03Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

AT2G27530.1 Ribosomal protein L1p/L10e family2.0e-2877.03Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

AT2G27530.2 Ribosomal protein L1p/L10e family2.0e-2877.03Show/hide
Query:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

AT5G22440.1 Ribosomal protein L1p/L10e family2.2e-2777.33Show/hide
Query:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE

AT5G22440.2 Ribosomal protein L1p/L10e family2.2e-2777.33Show/hide
Query:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE
        +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRPKMKIC+LGD  HVEE
Subjt:  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGG
ACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATG
TTGAAGAGAGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGG
ACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATG
TTGAAGAGAGGAGATGA
Protein sequenceShow/hide protein sequence
MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEERR