; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G002800 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G002800
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionVQ domain-containing protein
Genome locationGy14Chr2:1862984..1863970
RNA-Seq ExpressionCsGy2G002800
SyntenyCsGy2G002800
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]2.20e-7787.76Show/hide
Query:  MENF-TTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENF-TTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK

Query:  DCYGNSASGDVLFD-RIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        DCYG SASGDVLFD RIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYGNSASGDVLFD-RIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]1.06e-98100Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS
        MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS

Query:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
Subjt:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.04e-2853.9Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KDCY +
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
          S D  +D I          GEM+  S  GFQAS  V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]3.18e-2854.61Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KDCY +
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
          S D  +D I          GEM+  S  GFQAS  V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]5.58e-4677.39Show/hide
Query:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMEL
        QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP HD  DQS +DFN VFYPPP SS    SFDPKDCY  SASGDVLFD          W+GEME 
Subjt:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD--DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMEL

Query:  GSFSGFQASSCVNIW
        GSFSGFQASSCVN W
Subjt:  GSFSGFQASSCVNIW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein4.02e-99100Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS
        MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNS

Query:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
Subjt:  ASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

A0A0D2U3H7 VQ domain-containing protein9.38e-1042.34Show/hide
Query:  PIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPK---DCYGNSASGDVLFDRIEDGDEGRYWRGEMELGS
        P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS        +  N V      +++     D +   D Y +  S   LFD      EG  WRG  E  +
Subjt:  PIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPK---DCYGNSASGDVLFDRIEDGDEGRYWRGEMELGS

Query:  FSGFQASSCVN
          GFQ+ S  +
Subjt:  FSGFQASSCVN

A0A5A7VDH6 VQ motif-containing protein1.06e-7787.76Show/hide
Query:  MENF-TTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK
        MEN  TTLP++FHH+KVSQ SNK  TID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD   DQSVQDFNH FYPPPPSSS PGVSFDP+
Subjt:  MENF-TTLPSNFHHKKVSQVSNK-ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD---DQSVQDFNHVFYPPPPSSS-PGVSFDPK

Query:  DCYGNSASGDVLFD-RIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
        DCYG SASGDVLFD RIEDGDEGRYWRGEME GSFSGFQASSCVNIW
Subjt:  DCYGNSASGDVLFD-RIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.64e-2453.45Show/hide
Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSV-----QDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEME
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS++  VS DPK  YG      ++  ++ +  EG + + EM+
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSV-----QDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEME

Query:  LGSFSGFQASSCVNIW
           FSGFQAS CVN +
Subjt:  LGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.54e-2854.61Show/hide
Query:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KDCY +
Subjt:  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN

Query:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW
          S D  +D I          GEM+  S  GFQAS  V++W
Subjt:  SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW

SwissProt top hitse value%identityAlignment
Q9LDH1 Sigma factor binding protein 1, chloroplastic2.1e-0432.59Show/hide
Query:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGN
        KK S VS K+    +     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +   S    +H   PP  + +P V           DCY  
Subjt:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGN

Query:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA
          + D+ L D++  G  G +  G   +  F    +
Subjt:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein4.7e-0432.79Show/hide
Query:  KATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYG----NSASGDVLFDRIEDGDEGR
        K+T  H  KPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D              PP P++   V    + C          G+V  +     DE  
Subjt:  KATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYG----NSASGDVLFDRIEDGDEGR

Query:  YWRGEMELGSFSGFQASSCVNI
        +   +M  G  SGF +S   N+
Subjt:  YWRGEMELGSFSGFQASSCVNI

AT3G56710.1 sigma factor binding protein 11.5e-0532.59Show/hide
Query:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGN
        KK S VS K+    +     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   +   S    +H   PP  + +P V           DCY  
Subjt:  KKVSQVSNKATIDHQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQ---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGN

Query:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA
          + D+ L D++  G  G +  G   +  F    +
Subjt:  SASGDV-LFDRIEDGDEGRYWRGEMELGSFSGFQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACAT
TTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATT
TTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATT
GAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGA
mRNA sequenceShow/hide mRNA sequence
CTTCTTTTTTATAAAAAGATAAAATTATAAATATAAATATAATTAAATAATAATGATATTAATCTATATTAATCTCTCCTTCCACGAAACTCCCCTTTCTCAACACGTTA
CAAAATCCTACAAAACCCCCTCAAATTGTCTCATCACAAACAACAAATCAAATTTCCCTTTTAATTCTTCCTCTCCCAATTCTTCCTCTTTTTTATTTCTTTATGGAGAA
TTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTC
CCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCAT
GTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGG
TGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGACGGAGAGGAAAAGTTTGTG
GATGATGAGTGACATCATGACTTTTTTAGCTATAAAATATAATTTTTGTGAGACTTTGTATTTAGTATGTGAAAGGTTATATATGAATATATAGATTTGAATTTTCTTTT
GATTATTATAGAACACACATGTATGAGAATATTAGTTAAAAACAAAAAAAATGAAATGATTCCGAACATAACTTAACCTAAGTATATATTATATGCTCAACTGAATAAAA
TATAAATTCTCAATCCAAGAATAAAAAATGAAAGGATTTGATTAATTGGAATATTTTAGTACAGTGGTAGTGTTTATGTTGTGTTAGAACTCAATCTAAATGTTTGA
Protein sequenceShow/hide protein sequence
MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRI
EDGDEGRYWRGEMELGSFSGFQASSCVNIW