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CsGy2G002990 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G002990
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPSII 6.1 kDa protein
Genome locationGy14Chr2:1971548..1972833
RNA-Seq ExpressionCsGy2G002990
SyntenyCsGy2G002990
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139238.1 photosystem II reaction center W protein, chloroplastic [Cucumis sativus]4.70e-84100Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]7.18e-7291.04Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_016902308.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo]1.30e-6577.56Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA
        MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPA
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA

Query:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        VALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]1.93e-6076.87Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++ GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.02e-7190.3Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HSRLLLKGSSK+L SP +AAHRLP LQKMKKGGIKC VEEKPEGKK SEES+V GT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA VFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein2.28e-84100Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein3.48e-7291.04Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A1S4E257 PSII 6.1 kDa protein6.28e-6677.56Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA
        MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPA
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPA

Query:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        VALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Subjt:  VALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein9.34e-6176.87Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++ GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWILA +F  IWALYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein6.64e-5877.61Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN
        MAS+LL  SR+LLKGSS +L SP MAAHRLP   KMK+  IKC  EEK EGK+ SEE MV GTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        LLGWIL  +F LIW+LYFVYASSLDED+DSGLSL
Subjt:  LLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic3.5e-2558.2Show/hide
Query:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL
        LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF L
Subjt:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL

Query:  IWALYFVYASSLDEDEDSGLSL
        IW  +FVY SSL+EDE+SGLSL
Subjt:  IWALYFVYASSLDEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic2.3e-2451.82Show/hide
Query:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAA---GPAVALVDERLSTEGTGLPFGL
        +A   L H+  +   SS +L  P+M           K+  + CS+E KP   + +  +    ++GA  +AA AAA    PA+ALVDER+STEGTGLPFGL
Subjt:  MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAA---GPAVALVDERLSTEGTGLPFGL

Query:  SNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL
        SNNLLGWIL  VF LIWALYFVYAS L+EDE+SGLSL
Subjt:  SNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.2e-1849.02Show/hide
Query:  LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDED
        LP ++  +   ++C+       K+ +  +      GA  +A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL  VF LIW+LY +Y S L+EDE+
Subjt:  LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDED

Query:  SG
        SG
Subjt:  SG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.4e-1040Show/hide
Query:  KCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLD--EDEDSGLSL
        K +       KK++  S +P T+         AA PA ALVDER++ +GTG PFG+++ +LGW+L  VF  +WA++F+    L   ED D GL L
Subjt:  KCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLD--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W2.5e-2658.2Show/hide
Query:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL
        LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF L
Subjt:  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFAL

Query:  IWALYFVYASSLDEDEDSGLSL
        IW  +FVY SSL+EDE+SGLSL
Subjt:  IWALYFVYASSLDEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAA
GAAGGGAGGGATAAAATGTAGTGTGGAGGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGAACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAG
CGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTT
GCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA
mRNA sequenceShow/hide mRNA sequence
GTGTGGTGCATAAAGATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAACAACACGAGATCCAAGTTATACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGC
AGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGGTTG
CCCACGTTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGTGTGGAGGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGAACAGTGGGCGCAGT
GGCGATGGCTGCATTGGCAGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGT
GGATTTTGGCTGTGGTGTTTGCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGAATCCATCCAAGTTTC
TTAATAAGAAGAATTTATATTTAAATACTTGAGTCTATCTAAGTTGTATTCATCTTTTCACCCTTCACCTAATTGTTATTAAATCTCTTTCTTCAGTGATATTTGTTATC
TGTTTTCTTTATTTTAATAAAAAGATGAGATAGG
Protein sequenceShow/hide protein sequence
MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVF
ALIWALYFVYASSLDEDEDSGLSL