; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G006245 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G006245
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L23, chloroplastic
Genome locationGy14Chr2:4563786..4564274
RNA-Seq ExpressionCsGy2G006245
SyntenyCsGy2G006245
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001014 - Ribosomal protein L23/L25, conserved site
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651670.1 hypothetical protein Csa_021175 [Cucumis sativus]9.31e-6783.72Show/hide
Query:  MSHSVKILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP
        MSHSVKILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNWC                     GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP
Subjt:  MSHSVKILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP

Query:  IMGHTMHYRRMIITLQPGYSIPPLRKKRT
        IMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  IMGHTMHYRRMIITLQPGYSIPPLRKKRT

KAF1855813.1 hypothetical protein Lal_00045175 [Lupinus albus]2.21e-5877.24Show/hide
Query:  MESHHPYITNWCV-------------------------FTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM
        MESHHPYITNWCV                         FTDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLP KGRRM PIMGHTM
Subjt:  MESHHPYITNWCV-------------------------FTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM

Query:  HYRRMIITLQPGYSIPPLRKKRT
        HYRRMIITLQPGYSIPPLRKKRT
Subjt:  HYRRMIITLQPGYSIPPLRKKRT

KAG6467610.1 hypothetical protein ZIOFF_074559 [Zingiber officinale]1.77e-6482.11Show/hide
Query:  MGPSNKSIGIGSVSMESHHPYITNW-----------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM
        MG  NKSIGIGSVSMESHHP ITNW            VFT+KSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRR GPIMGHTM
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW-----------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM

Query:  HYRRMIITLQPGYSIPPLRKKRT
        HYRRMIITL+ GYSIPPL +KRT
Subjt:  HYRRMIITLQPGYSIPPLRKKRT

QZQ52882.1 ribosomal protein L23 [Zostera japonica]1.13e-6467.5Show/hide
Query:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI
        K +GSIP GCTPMG  NKSIGIGSV +ESHHP+ITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEI
Subjt:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI

Query:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT
        KHWVELFFGVKVIAMNSHRLP KGRRMGPIMGHTMHY  RRMIITLQPGY IPPL +KRT
Subjt:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT

YP_009433353.1 ribosomal protein L23 [Zostera marina]1.96e-6568.12Show/hide
Query:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI
        K +GSIP GCTPMG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEI
Subjt:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI

Query:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT
        KHWVELFFGVKVIAMNSHRLP KGRRMGPIMGHTMHY  RRMIITLQPGY IPPL +KRT
Subjt:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT

TrEMBL top hitse value%identityAlignment
A0A290Y2L5 50S ribosomal protein L23, chloroplastic9.48e-6668.12Show/hide
Query:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI
        K +GSIP GCTPMG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEI
Subjt:  KILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEI

Query:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT
        KHWVELFFGVKVIAMNSHRLP KGRRMGPIMGHTMHY  RRMIITLQPGY IPPL +KRT
Subjt:  KHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT

A0A290Y2N1 50S ribosomal protein L23, chloroplastic4.82e-5867.57Show/hide
Query:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV
        MG  NKSIGIGSV +ESHHPYITNW                                   VFT+KSIRLL  NQYTSNVESGSTRTEIKHWVELFFGVKV
Subjt:  MGPSNKSIGIGSVSMESHHPYITNW----------------------------------CVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKV

Query:  IAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT
        IAMNSHRLP KGRRMGPIMGHTMHY  RRMIITLQPGY IPPL +KRT
Subjt:  IAMNSHRLPGKGRRMGPIMGHTMHY--RRMIITLQPGYSIPPLRKKRT

A0A6A5N094 50S ribosomal protein L23, chloroplastic1.07e-5877.24Show/hide
Query:  MESHHPYITNWCV-------------------------FTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM
        MESHHPYITNWCV                         FTDKSIRLL KNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLP KGRRM PIMGHTM
Subjt:  MESHHPYITNWCV-------------------------FTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTM

Query:  HYRRMIITLQPGYSIPPLRKKRT
        HYRRMIITLQPGYSIPPLRKKRT
Subjt:  HYRRMIITLQPGYSIPPLRKKRT

A0A6F8EW89 50S ribosomal protein L23, chloroplastic8.02e-5793.41Show/hide
Query:  ITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        +  + +FTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  ITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

F5C018 50S ribosomal protein L23, chloroplastic1.14e-5697.73Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

SwissProt top hitse value%identityAlignment
Q06R67 50S ribosomal protein L23, chloroplastic8.5e-4596.59Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFT+KSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic1.1e-4496.59Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic1.1e-4496.59Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP MGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic2.9e-4597.73Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic2.9e-4597.73Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.15.6e-4493.18Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT

ATCG01300.1 ribosomal protein L235.6e-4493.18Show/hide
Query:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT
        + VFTDKSIRLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRRMIITLQPGYSIPPLRKKRT
Subjt:  WCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACATTCAGTAAAGATTTTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCC
ATACATAACGAATTGGTGTGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATT
GGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGT
ATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACATTCAGTAAAGATTTTAGGTTCAATTCCTACTGGATGCACGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCC
ATACATAACGAATTGGTGTGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATT
GGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGT
ATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA
Protein sequenceShow/hide protein sequence
MSHSVKILGSIPTGCTPMGPSNKSIGIGSVSMESHHPYITNWCVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRR
MIITLQPGYSIPPLRKKRT