CuGenDBv2

Gene ID	CsGy2G007800
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	INO80 complex subunit C
Genome location	Gy14Chr2:6452905..6460958
RNA-Seq Expression	CsGy2G007800
Synteny	CsGy2G007800
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0005737 - cytoplasm (cellular component) GO:0031011 - Ino80 complex (cellular component)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]

2.01e-87

100

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

1.36e-85

98.39

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

2.25e-84

95.16

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]

8.76e-108

100

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLRWLQDHATLSKFQEMSHHSILLVVLTT
        VIRSLPNEYVQRYLAMRNAAVVLRWLQDHATLSKFQEMSHHSILLVVLTT
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLRWLQDHATLSKFQEMSHHSILLVVLTT

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

1.16e-86

99.19

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

9.71e-88

100

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A1S3B479 INO80 complex subunit C isoform X1

6.57e-86

98.39

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

1.09e-84

95.16

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1FBP9 INO80 complex subunit C isoform X1

1.55e-84

96.77

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1HLV4 INO80 complex subunit C isoform X1

1.55e-84

96.77

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

7.4e-08

37.31

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Query:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR
        Y ++E+PPS+ P K+ CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL+
Subjt:  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR

Q5BJY3 INO80 complex subunit C

1.8e-14

40.66

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C

1.8e-14

40.66

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C

4.8e-15

42.86

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Query:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies6

1.5e-13

41.24

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Query:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Subjt:  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

6.6e-04

54.29

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Query:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

3.8e-44

65.32

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Query:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+   L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCKR+CDITGYEAPY DPRT LRYANA +F+
Subjt:  MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
         +RSL ++ V +YL++RNAAVVL+
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

Sequences

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CDS sequence

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ATGGAGTCGGAGGTGATAGAAGCGGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTG
GAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAA
TTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTC
CAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGATGGCTGCAAGATCACGCCACCTTATCCAAATTTCAAGAAATGAGTCATCATTCCATTTTATTAGTTGT
ATTGACAACATAG

mRNA sequence

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TGCTCGAAACTATTACATATTTACATTCGCTCCTCCCAAATACAAACACAAACACAGCTTAATTCAGTATTAAAAGCGCGGCAAGGCAGTACGACCGGTAAATTGAATCG
GTGATTTTGCAGGCTGCCGCCATGGACTAATCGTTAGGGCTTCTGTTTAACCTTTGAATGTCAAAAGTATTTCAGAAATCAGAAGATATTTAATTCAGTATTAAACAAGA
GTTTATTAAGATGGAGTCGGAGGTGATAGAAGCGGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCTAGAG
GCAGGCACTGGAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCA
TGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAA
TGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGATGGCTGCAAGATCACGCCACCTTATCCAAATTTCAAGAAATGAGTCATCATTCCATTT
TATTAGTTGTATTGACAACATAGGCAAATTGAAGTTGGCTGAAATCGAACTTCAGGATGGAACTAAGATTTCTAAAGAAATCAAATCACATATGATTTGATCTTTTATCA
TATGAGAAAGAATGGTATAAGTTTCAATACGAAACTGCATAGGAGAAGATTATTCATTACGTATCACAACAGAAATCATGAGGGCGGATTGGAGTCAATACGAGCTGACA
GATAAGATCATGAGAAGGCTCAATTAGTCAAAGCCATATTTGAAACTTCTTAACATTCCTTACTAACCGACTACATTGTCTAACAATTAATAGGTAGAGTTGACAAGTAT
ATCCTAACCATCTTTTCCTGAATTACTTAGATGATGCATTTTGTACGATGTCTAAAGAATTCCAGAATTTAGCTGAAAAACAATGTCACTTGATCGTTGATTGCCATCCT
CTTTCATTTATGTGGACCTGATAGAGTTCAAAGTAGGCC

Protein sequence

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MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVVLRWLQDHATLSKFQEMSHHSILLVVLTT

CsGy2G007800 (gene) of Cucumber (Gy14) v2.1 genome