CuGenDBv2

Gene ID	CsGy2G008380
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L38
Genome location	Gy14Chr2:7412985..7416317
RNA-Seq Expression	CsGy2G008380
Synteny	CsGy2G008380
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022618 - ribonucleoprotein complex assembly (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CDP04642.1 unnamed protein product [Coffea canephora]

1.39e-39

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

KCW87739.1 hypothetical protein EUGRSUZ_A00108, partial [Eucalyptus grandis]

1.23e-39

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

QCG74680.1 60S ribosomal protein L38-like protein, partial [Coffea canephora]

7.86e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_002514807.2 60S ribosomal protein L38 [Ricinus communis]

4.97e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

XP_008793782.2 60S ribosomal protein L38 [Phoenix dactylifera]

1.37e-39

98.55

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARS+KIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CB44 60S ribosomal protein L38

2.41e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A5J5AU72 Uncharacterized protein

2.41e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6J1CW23 60S ribosomal protein L38

2.41e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6J1I9U6 60S ribosomal protein L38

2.41e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

A0A6P6UE62 60S ribosomal protein L38

2.41e-40

100

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

2.2e-31

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L38

2.7e-29

91.3

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L38

5.8e-24

76.81

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L38

3.6e-26

82.61

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L38

2.0e-24

78.26

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

1.6e-32

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family

1.6e-32

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

Sequences

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CDS sequence

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ATGCCAAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCTAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCG
CTGCTCCAAGTACCTTTACACGCTCTGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGA

mRNA sequence

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AACCTTATGGCCCATTAGTTCGATCTGCTGAATCCGAAACCCTAAAAAAAAAATAAAAAAAGAAAAAGAAATCGCCATTCGCCCATCGTTCTTCCGAAACCCTAAAAAAG
ACTTCCTCCTTCTTCATTTGTTTCTCTCATATCCTCACGTCCCAACGCCGTTCGTATCACACTTCTTCTCTCACCACCCCTAAAAATGCCAAAGCAAATCCATGAGATCA
AAGACTTTCTTCTCACTGCTAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGCAAAGATGTAGTCAAGTTTAAGGTTCGCTGCTCCAAGTACCTTTACACGCTC
TGCGTCTTTGACTCGGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCCCCAGGTTTGAGTGTGCAAGATCTTTGAAGAAGTAGTGAGCGAATTTTGGAGATTTATATGGA
AAAACAAGGGCTGAAGGAAACATTTGCCAGTTATTTTTCTTTCTTATTTTCAATCATCTGCTGTGTTGAATGTTCGGATTTTTATAGGGACGGCTGTTCTTGTCACGAGT
AGGAGTTGGACTGAACTTTTAGCGTTTCTTAAATTTTATGAACCCATCTCAGATTTTGAACTGTGAGAGATTTGTCCATCATTTAATCACAACTTCTATCATCATTTTGG
CCCTTTTGTTCTATATTTTAGTTTTCCTCATCAGAAATCATTTTACTCATCAGAAATTGTCAGGCAGCATATGAAATTCTCCATTGGATTTTTCTGGGTAGGTGGATGAT
AAAGTTAAAGGAATACTCTTCTTGTTTTAAACTTTCTGGGTCTTAAAAGATTTGGAGAAAACGTTTTTGTTTTCCTAGAACTTCTGATAATTATTCTGCCTTTTATAATT
GTCTCTCTTTTTTTTTGTTAGGATCATACCTTAAATGTTTGATAACTATACAATGTTTCCCATAACAATCTTGTATTTTTTCAGCTTGTAATATGGATTTCATATGGAAC
AATTGCATGGATCACAATTATCTGTAAATGGATTTGTAATGAGGGTCCTTTGCTTGAATAGTTGTGTCTTGTGGATTATTCAACGTATAATTTCTCGATGAAGTCCTAGG
AGTGTTGTGTGTTGCCAGTGAAATGCAAAATACTAGTCTATTGAAAGTATAAGAGGAAAAAATGAAGAAAAATGATGTTTCACATGTACAATGGTAACATTTGGACTCAT
ATAGTTGAGGTTATTTTGATGTTTGTAATGTTGTGACACCTACAAAATATGGAGTTTTCATTTTCTTAGTTTCTAACTCTTCCACCATGGTATAGGCTTGATTCTCTGCA
AAAAAGTGTACATAGGTAACATGAAATGAGTTGAGTTGGTATAATATATCACTTCATTGTTTGTTTTCCAACTCTCTCTCCTTCCATTGTTTTTAACTAGTTCACTCATT
AGCCATCTTCAATGACTACCATTGCCACACTCCGAGAATCAACTTCGACAGTCACTTTCACACAAGCAACTCACAACCACCTTTGACAATAAACTCCGACAAATGACGAT
CAGTTTTGGTTTTTGATACCACCTTCGACAAGAAACTCTGATAAAAACCACTTTCAATGGTCAATTTCGATGATCACTTTTACACGATTAATTTTGATGACCAACTTTGG
GCTCCAACAACCACCTTAAGCATGATCAACACCAATGACCAATTATGGACTCTAATAACCATCCCTAACAATAAACTTCGATAAAAATCACTTTCAATGATCAACTTCAT
TGAACACATTTGCCAACTAACTCTAGGCTCTAATGACGAACTCTCATGAACAATTTCAAATCACTTCCTACAACTCCAAACTGGAAAATCACCTTTGATAATTAACTTCG
ATGATCAGCTTCAACGTCAGACTCCAACAATAAAGTTGGACGAAAACCACATTTGTTAATCAACTTCAATGATAACTACGTCTAAGGATGAATAACAACATTTACCTTAG
GCAACAAACACTGGCGAATACTACCTCTAATGACCGACTTTAATCACAATCAAATTTGGTGACGAACTTTAACAATGATCTTAAGCAACTAACTCCAACCACCAACTTTG
TTGTCCACCTCTAATTACTAATTCTATCGACCAACTTGAACAATAATATATTGTAAAAAAAGCTTGTACTAAGTG

Protein sequence

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MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL

CsGy2G008380 (gene) of Cucumber (Gy14) v2.1 genome