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CsGy2G009125 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G009125
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationGy14Chr2:8306286..8306627
RNA-Seq ExpressionCsGy2G009125
SyntenyCsGy2G009125
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041811.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]3.34e-0545.61Show/hide
Query:  CKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL
        CK +  TK L++ F  G+   IL GDPS T+ E+SL+ L K WQ   +GFL++ RA+
Subjt:  CKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL

KAA0049174.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]3.97e-0554.55Show/hide
Query:  KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL-MPSA
        KALT+ F  G   VIL GDPS T+ EISL+ L K WQ   +GFLV  RA+ +P A
Subjt:  KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL-MPSA

KAA0062470.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.48e-0647.76Show/hide
Query:  KGSLSGLECKGLKLT--KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL
        K   SGL+ +G      KALT+ F  G   VIL GDPS T+ EISL+ L K WQ + +GFL+  RA+
Subjt:  KGSLSGLECKGLKLT--KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL

KGN61441.1 hypothetical protein Csa_006723 [Cucumis sativus]9.52e-74100Show/hide
Query:  MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL
        MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL
Subjt:  MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL

Query:  VEMRALMPSALTN
        VEMRALMPSALTN
Subjt:  VEMRALMPSALTN

XP_022154744.1 uncharacterized protein LOC111021922 [Momordica charantia]3.96e-0750Show/hide
Query:  ALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRA
        ALT+ F  G N +IL GDP+  + E++L++L++ W+TH +GFLVE+RA
Subjt:  ALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRA

TrEMBL top hitse value%identityAlignment
A0A0A0LN98 Uncharacterized protein4.61e-74100Show/hide
Query:  MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL
        MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL
Subjt:  MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFL

Query:  VEMRALMPSALTN
        VEMRALMPSALTN
Subjt:  VEMRALMPSALTN

A0A5A7TJS6 Ty3-gypsy retroelement transposase1.62e-0545.61Show/hide
Query:  CKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL
        CK +  TK L++ F  G+   IL GDPS T+ E+SL+ L K WQ   +GFL++ RA+
Subjt:  CKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL

A0A5A7U1I8 Gypsy/ty3 element polyprotein1.92e-0554.55Show/hide
Query:  KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL-MPSA
        KALT+ F  G   VIL GDPS T+ EISL+ L K WQ   +GFLV  RA+ +P A
Subjt:  KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL-MPSA

A0A5A7V5G0 Ty3/gypsy retrotransposon protein3.14e-0647.76Show/hide
Query:  KGSLSGLECKGLKLT--KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL
        K   SGL+ +G      KALT+ F  G   VIL GDPS T+ EISL+ L K WQ + +GFL+  RA+
Subjt:  KGSLSGLECKGLKLT--KALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRAL

A0A6J1DN22 Reverse transcriptase1.92e-0750Show/hide
Query:  ALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRA
        ALT+ F  G N +IL GDP+  + E++L++L++ W+TH +GFLVE+RA
Subjt:  ALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTGAAGAGAAACATTCCTCAAAGATTAGCAAGCCCAATTGGAAGGATAGATGTAAACCCCACGAAGGTTAGAGTCTCATTTGTGCTGAAATGCAATCAAGAAGA
GAAAAGGAAGAGAAAAGGGTCACTCAGTGGCTTAGAATGTAAGGGGCTGAAGTTGACTAAGGCATTGACCTTGAAGTTCGAGAAGGGAAAGAATTGTGTGATTCTCCTTG
GGGATCCTTCACAGACTAAGAAAGAAATTTCTCTCGAAAGGTTATCAAAGCAGTGGCAGACCCATCACAAGGGTTTTCTTGTAGAAATGAGAGCCCTCATGCCATCAGCA
TTGACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTGAAGAGAAACATTCCTCAAAGATTAGCAAGCCCAATTGGAAGGATAGATGTAAACCCCACGAAGGTTAGAGTCTCATTTGTGCTGAAATGCAATCAAGAAGA
GAAAAGGAAGAGAAAAGGGTCACTCAGTGGCTTAGAATGTAAGGGGCTGAAGTTGACTAAGGCATTGACCTTGAAGTTCGAGAAGGGAAAGAATTGTGTGATTCTCCTTG
GGGATCCTTCACAGACTAAGAAAGAAATTTCTCTCGAAAGGTTATCAAAGCAGTGGCAGACCCATCACAAGGGTTTTCTTGTAGAAATGAGAGCCCTCATGCCATCAGCA
TTGACAAATTGA
Protein sequenceShow/hide protein sequence
MGLKRNIPQRLASPIGRIDVNPTKVRVSFVLKCNQEEKRKRKGSLSGLECKGLKLTKALTLKFEKGKNCVILLGDPSQTKKEISLERLSKQWQTHHKGFLVEMRALMPSA
LTN