; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G009635 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G009635
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr2:9125817..9126960
RNA-Seq ExpressionCsGy2G009635
SyntenyCsGy2G009635
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062985.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.18e-4971.9Show/hide
Query:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL
        MPRFN Q+QF NN HQAY    +Q  +SN WYPDT ATNHITNDL NLNYSTNY+ VEQVHV +GT LKILN GHSF IP DI IS +NHCPILS+PN+L
Subjt:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL

Query:  HVPHIKKNLLSVSQ--FTKDN
        HVPHIKKNLLSV+   ++KDN
Subjt:  HVPHIKKNLLSVSQ--FTKDN

KAE8651778.1 hypothetical protein Csa_006130, partial [Cucumis sativus]2.90e-217100Show/hide
Query:  MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKTIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ
        MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKTIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ
Subjt:  MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKTIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQ

Query:  AYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFT
        AYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFT
Subjt:  AYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFT

Query:  KDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE
        KDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE
Subjt:  KDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNE

KAG8480057.1 hypothetical protein CXB51_025173 [Gossypium anomalum]3.33e-3746.2Show/hide
Query:  SNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHP
        S+ WYPD+GA++H+  + A+LN ST Y+   ++ +GNG   KIL+ G++       +IS N+   +L + N+L VP I+KNLLSVSQF KDN+ FFEFHP
Subjt:  SNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHP

Query:  TICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESL
        T C +K  +T++ LL+GQ+H+GLY FS+  A P S S  +    ++ P +L++S         T TLWHNRLGHPS  VVN+ L
Subjt:  TICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESL

RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.30e-4243.46Show/hide
Query:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD
        M +T +D  +  W+PD+GATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLSVSQF +D
Subjt:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD

Query:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
        NN +FEFHP +CFVK +     LLQG LH+GLY+F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP
         L   D+ IPF     + I     CS   LG   + P
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP

RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.34e-4243.46Show/hide
Query:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD
        M +T +D  +  W+PD+GATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLSVSQF +D
Subjt:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD

Query:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
        NN +FEFHP +CFVK +     LLQG LH+GLY+F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP
         L   D+ IPF     + I     CS   LG   + P
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP

TrEMBL top hitse value%identityAlignment
A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-941.11e-4243.46Show/hide
Query:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD
        M +T +D  +  W+PD+GATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLSVSQF +D
Subjt:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD

Query:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
        NN +FEFHP +CFVK +     LLQG LH+GLY+F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP
         L   D+ IPF     + I     CS   LG   + P
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP

A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.13e-4243.46Show/hide
Query:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD
        M +T +D  +  W+PD+GATNH+T+DL NLN    YN   ++H+GNGT LKI + G S F  S    SPN    +L + N+L VP IKKNLLSVSQF +D
Subjt:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD

Query:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE
        NN +FEFHP +CFVK +     LLQG LH+GLY+F+L K      +  S+++ +++L   +A +V  ++  FP   NSS     LWH RLGHP++ +V +
Subjt:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVK---AHPNSESVTSHQSQLEKPHALVVSTNH--FP--INSSTQT--LWHNRLGHPSTTVVNE

Query:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP
         L   D+ IPF     + I     CS   LG   + P
Subjt:  SLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP

A0A5D3CWR9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.06e-4971.9Show/hide
Query:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL
        MPRFN Q+QF NN HQAY    +Q  +SN WYPDT ATNHITNDL NLNYSTNY+ VEQVHV +GT LKILN GHSF IP DI IS +NHCPILS+PN+L
Subjt:  MPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLL

Query:  HVPHIKKNLLSVSQ--FTKDN
        HVPHIKKNLLSV+   ++KDN
Subjt:  HVPHIKKNLLSVSQ--FTKDN

A0A803NGK1 Uncharacterized protein2.20e-3639.75Show/hide
Query:  FICPNFQKQFTSNTPPGMP----RFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFF-
        F  PN  K    N     P    R       GN   QAY +S     + + WYPD+GAT+H+T + +NL+ ST+Y+  EQ+ +GNG  L I N G++ F 
Subjt:  FICPNFQKQFTSNTPPGMP----RFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFF-

Query:  --IPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRF-SLVKAHPNSESVTSHQSQLEKP
           PS  L+          + NLLHVP + KNLLSVSQF KDNN FFEFHP  C VK Q T++ LL G+L  GLY+F +L  + P+     +  + L   
Subjt:  --IPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRF-SLVKAHPNSESVTSHQSQLEKP

Query:  HALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESLIYGDHHIP
        H     ++ F  N+   +LWH+RLGHPS  +V  +L   + H+P
Subjt:  HALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESLIYGDHHIP

A0A803Q0C6 Uncharacterized protein1.21e-3846.39Show/hide
Query:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD
        + +T +     +WYPDTGAT+H+T DLANL+ S+ Y+  EQV+VGNG  L I N G+SF      + SP N    LSI NLLHVP I KNLLSVSQF +D
Subjt:  MSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKD

Query:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSH-QSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESL
        N  FFEF+P  C VK   T+K LL G L  GLY+F   + +P   +   H  SQ   P     ++    +N+S  +LWH+RLGHP+  +V  +L
Subjt:  NNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSH-QSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESL

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.6e-1631.32Show/hide
Query:  NSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFH
        +SN W  D+GAT+HIT+D  NL+    Y   + V V +G+++ I ++G +         S +     L++ N+L+VP+I KNL+SV +    N    EF 
Subjt:  NSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFH

Query:  PTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVN
        P    VK   T   LLQG+  + LY + +  + P                   VS    P + +T + WH RLGHP+ +++N
Subjt:  PTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-1729.72Show/hide
Query:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNN
        Q+Q TS   P  PR N      N+P+           N+N W  D+GAT+HIT+D  NL++   Y   + V + +G+++ I ++G S  +P+        
Subjt:  QKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDKNSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNN

Query:  HCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINS
            L +  +L+VP+I KNL+SV +    N    EF P    VK   T   LLQG+  + LY + +     +S++V+   S               P + 
Subjt:  HCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHPTICFVKCQETEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINS

Query:  STQTLWHNRLGHPSTTVVNESLIYGDHHIPFQEMGFAIISP---LLTCS
        +T + WH+RLGHPS  ++N   +  +H +P       +++P   LL+CS
Subjt:  STQTLWHNRLGHPSTTVVNESLIYGDHHIPFQEMGFAIISP---LLTCS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATAAGAAACAATGACAAAGCCAAGAGCAAAGAAATCAAGGGCAAAGTCAATGGAACCAGTGGCAAAATAGCAACAGAGGAGGACAAAACAATAATGATGGTGGA
AATTGAGGAAGAGGAAGAAAATCTTGGAACAACTCAAACCACAATGCTAAATTTGTGGAAAATTTGGCCACACAACCATGAGATGCTATTTTTTATATGCCCGAACTTTC
AAAAACAGTTCACTAGTAATACTCCACCTGGAATGCCAAGGTTCAATAAGCAGGATCAGTTCGGAAATAATCCCCATCAAGCTTATATGAGTTCTACTTCACAAGACAAG
AATAGTAATAGATGGTATCCGGACACTGGTGCAACTAATCACATCACAAATGATCTTGCTAACCTCAATTACAGCACAAACTACAACGAAGTAGAACAAGTTCATGTTGG
TAATGGAACAAGTTTAAAAATTCTGAACTCTGGTCATTCTTTCTTTATTCCTTCGGATATTTTAATTTCTCCTAATAATCATTGTCCTATTCTCTCCATACCAAATCTTC
TTCATGTTCCCCACATAAAGAAAAATCTCCTAAGTGTAAGTCAATTTACAAAAGATAATAATTGTTTCTTTGAATTCCATCCAACAATTTGTTTTGTTAAGTGTCAGGAA
ACTGAAAAATTTTTACTCCAAGGACAACTTCATGAAGGACTATATCGTTTCTCACTAGTGAAAGCTCATCCCAATTCAGAGTCAGTCACCTCTCATCAATCTCAACTTGA
GAAACCACATGCTCTAGTAGTCTCCACAAATCATTTTCCTATCAATTCAAGCACTCAAACTCTTTGGCACAATAGATTAGGCCATCCATCTACTACCGTTGTAAACGAAA
GTCTGATTTATGGGGACCATCACATACCATTTCAAGAAATGGGTTTCGCTATTATATCACCTTTGTTGACATGTTCTCCCGCCACACTTGGATATATTTTCTCCAATCCA
AGTCTGAAGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATAAGAAACAATGACAAAGCCAAGAGCAAAGAAATCAAGGGCAAAGTCAATGGAACCAGTGGCAAAATAGCAACAGAGGAGGACAAAACAATAATGATGGTGGA
AATTGAGGAAGAGGAAGAAAATCTTGGAACAACTCAAACCACAATGCTAAATTTGTGGAAAATTTGGCCACACAACCATGAGATGCTATTTTTTATATGCCCGAACTTTC
AAAAACAGTTCACTAGTAATACTCCACCTGGAATGCCAAGGTTCAATAAGCAGGATCAGTTCGGAAATAATCCCCATCAAGCTTATATGAGTTCTACTTCACAAGACAAG
AATAGTAATAGATGGTATCCGGACACTGGTGCAACTAATCACATCACAAATGATCTTGCTAACCTCAATTACAGCACAAACTACAACGAAGTAGAACAAGTTCATGTTGG
TAATGGAACAAGTTTAAAAATTCTGAACTCTGGTCATTCTTTCTTTATTCCTTCGGATATTTTAATTTCTCCTAATAATCATTGTCCTATTCTCTCCATACCAAATCTTC
TTCATGTTCCCCACATAAAGAAAAATCTCCTAAGTGTAAGTCAATTTACAAAAGATAATAATTGTTTCTTTGAATTCCATCCAACAATTTGTTTTGTTAAGTGTCAGGAA
ACTGAAAAATTTTTACTCCAAGGACAACTTCATGAAGGACTATATCGTTTCTCACTAGTGAAAGCTCATCCCAATTCAGAGTCAGTCACCTCTCATCAATCTCAACTTGA
GAAACCACATGCTCTAGTAGTCTCCACAAATCATTTTCCTATCAATTCAAGCACTCAAACTCTTTGGCACAATAGATTAGGCCATCCATCTACTACCGTTGTAAACGAAA
GTCTGATTTATGGGGACCATCACATACCATTTCAAGAAATGGGTTTCGCTATTATATCACCTTTGTTGACATGTTCTCCCGCCACACTTGGATATATTTTCTCCAATCCA
AGTCTGAAGCCTTAA
Protein sequenceShow/hide protein sequence
MLIRNNDKAKSKEIKGKVNGTSGKIATEEDKTIMMVEIEEEEENLGTTQTTMLNLWKIWPHNHEMLFFICPNFQKQFTSNTPPGMPRFNKQDQFGNNPHQAYMSSTSQDK
NSNRWYPDTGATNHITNDLANLNYSTNYNEVEQVHVGNGTSLKILNSGHSFFIPSDILISPNNHCPILSIPNLLHVPHIKKNLLSVSQFTKDNNCFFEFHPTICFVKCQE
TEKFLLQGQLHEGLYRFSLVKAHPNSESVTSHQSQLEKPHALVVSTNHFPINSSTQTLWHNRLGHPSTTVVNESLIYGDHHIPFQEMGFAIISPLLTCSPATLGYIFSNP
SLKP