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CsGy2G009695 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G009695
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationGy14Chr2:9185976..9186260
RNA-Seq ExpressionCsGy2G009695
SyntenyCsGy2G009695
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057292.1 hypothetical protein E6C27_scaffold280G001330 [Cucumis melo var. makuwa]1.95e-1873.33Show/hide
Query:  SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTET-NYASWSQAMKIRLIGKNKLGF
        S NQT N S +EQYSN YFLHH +NTSIVLV N LTET NY SWSQA+KI L GKN LGF
Subjt:  SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTET-NYASWSQAMKIRLIGKNKLGF

KGN61515.1 hypothetical protein Csa_006367 [Cucumis sativus]2.12e-59100Show/hide
Query:  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
        MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
Subjt:  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS

XP_022142327.1 uncharacterized protein LOC111012468 [Momordica charantia]3.83e-1860Show/hide
Query:  SSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP
        SSS+ +     S +E YSNPY+LHHS+NTS+VLVS+LL E NY SWS++M I L  KNK+GF D SI+RP
Subjt:  SSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP

XP_038887186.1 uncharacterized protein LOC120077373 [Benincasa hispida]2.00e-1862.34Show/hide
Query:  PTLHPNSSSSINQTTNFST-IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP
        PT   NS+S  N   + S+ +EQY NPYFLH S++TS+VLVSNLLTE+NY SWSQAMKI L  KNKLGF +  I RP
Subjt:  PTLHPNSSSSINQTTNFST-IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP

XP_038902375.1 uncharacterized protein LOC120089012 [Benincasa hispida]3.99e-1871.43Show/hide
Query:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITR
        +EQY+N YFLHHS++T++V+VSNLLTETNY SWSQ M I LI KNKLGF D SI R
Subjt:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITR

TrEMBL top hitse value%identityAlignment
A0A0A0LI19 Retrotran_gag_3 domain-containing protein1.03e-59100Show/hide
Query:  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
        MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS
Subjt:  MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS

A0A5D3CPS4 Retrotran_gag_3 domain-containing protein9.45e-1973.33Show/hide
Query:  SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTET-NYASWSQAMKIRLIGKNKLGF
        S NQT N S +EQYSN YFLHH +NTSIVLV N LTET NY SWSQA+KI L GKN LGF
Subjt:  SINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTET-NYASWSQAMKIRLIGKNKLGF

A0A6J1CMF8 uncharacterized protein LOC1110124681.86e-1860Show/hide
Query:  SSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP
        SSS+ +     S +E YSNPY+LHHS+NTS+VLVS+LL E NY SWS++M I L  KNK+GF D SI+RP
Subjt:  SSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP

A0A6J1DIP8 uncharacterized protein LOC1110203992.80e-1668.42Show/hide
Query:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP
        IEQY+NPYFLHHS+NTS+VLVS+ LT  NY SWS++M I L  KNK+GF D SI RP
Subjt:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP

A0A6J1DNP7 uncharacterized protein LOC1110220652.09e-1664.91Show/hide
Query:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP
        +EQ++NPYFLHHS+NTS+VLVS+LLT+ NY SWS+++ I L  KNK+GF D SI+RP
Subjt:  IEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAACCCACCCTTCATCCCAATTCCTCTTCATCCATCAACCAGACGACGAATTTCTCCACCATCGAGCAATATTCCAATCCCTACTTTCTACACCATTCAAACAA
CACGAGTATCGTTCTCGTATCCAACCTCCTTACTGAAACAAATTATGCCTCTTGGAGTCAAGCGATGAAAATCAGATTAATCGGGAAGAACAAACTTGGCTTCACCGATG
ACAGTATCACACGTCCCAAAACTTGGCTTCACCTAAGTGACACTTTAACTCTCAAGACAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAACCCACCCTTCATCCCAATTCCTCTTCATCCATCAACCAGACGACGAATTTCTCCACCATCGAGCAATATTCCAATCCCTACTTTCTACACCATTCAAACAA
CACGAGTATCGTTCTCGTATCCAACCTCCTTACTGAAACAAATTATGCCTCTTGGAGTCAAGCGATGAAAATCAGATTAATCGGGAAGAACAAACTTGGCTTCACCGATG
ACAGTATCACACGTCCCAAAACTTGGCTTCACCTAAGTGACACTTTAACTCTCAAGACAAGTTAA
Protein sequenceShow/hide protein sequence
MAKPTLHPNSSSSINQTTNFSTIEQYSNPYFLHHSNNTSIVLVSNLLTETNYASWSQAMKIRLIGKNKLGFTDDSITRPKTWLHLSDTLTLKTS