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CsGy2G010590 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G010590
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionphotosystem II reaction center protein I
Genome locationGy14Chr2:10433223..10434039
RNA-Seq ExpressionCsGy2G010590
SyntenyCsGy2G010590
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003686 - Photosystem II PsbI
IPR008896 - Protein TIC214
IPR037271 - Photosystem II PsbI superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFA27624.1 photosystem II protein I, partial [Apostasia wallichii]1.47e-1694.59Show/hide
Query:  INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        + FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

AFA27638.1 photosystem II protein I, partial [Georgeantha hexandra]8.97e-1789.74Show/hide
Query:  NKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        + + FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  NKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

QYB20830.1 photosystem II protein I [Afrocarpus falcatus]9.56e-1772Show/hide
Query:  SMFRCNNK------INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE
        ++FRCN+       + FTLKLFVYTVV+FFVSLFIFGFLSNDPGRNPGR+
Subjt:  SMFRCNNK------INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE

QYB22223.1 photosystem II protein I [Prumnopitys andina]1.70e-1672Show/hide
Query:  SMFRCNNK------INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE
        ++FRCN+K      +  TLKLFVYT+VIFFVSLFIFGFLSNDPGRNPGR+
Subjt:  SMFRCNNK------INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE

YP_009542196.1 photosystem II protein I [Tetraena mongolica]1.85e-1681.4Show/hide
Query:  FRCNNKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        F   + +  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  FRCNNKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

TrEMBL top hitse value%identityAlignment
A0A0A0LLK2 Uncharacterized protein3.50e-3060.75Show/hide
Query:  MLNLHTMHFILPSSMLVRLVNISMFRCNNKINF----------------------------------------TLKLFVYTVVIFFVSLFIFGFLSNDPG
        MLNLHTMHFILPSSMLVRLVNISMFRCNNK+ F                                        TLKLFVYTVVIFFVSLFIFGFLSNDPG
Subjt:  MLNLHTMHFILPSSMLVRLVNISMFRCNNKINF----------------------------------------TLKLFVYTVVIFFVSLFIFGFLSNDPG

Query:  RNPGREE
        RNPGREE
Subjt:  RNPGREE

A0A0K0VI42 Photosystem II reaction center protein I9.39e-17100Show/hide
Query:  FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

A0A3G4R1V2 Photosystem II reaction center protein I8.97e-1781.4Show/hide
Query:  FRCNNKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        F   + +  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  FRCNNKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

H6T0P5 Photosystem II protein I (Fragment)7.10e-1794.59Show/hide
Query:  INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        + FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  INFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

H6T0Q9 Photosystem II protein I (Fragment)4.34e-1789.74Show/hide
Query:  NKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        + + FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  NKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

SwissProt top hitse value%identityAlignment
A4QJ99 Photosystem II reaction center protein I2.9e-12100Show/hide
Query:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

A4QJI3 Photosystem II reaction center protein I2.9e-12100Show/hide
Query:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

A6H5E9 Photosystem II reaction center protein I2.2e-1297.14Show/hide
Query:  FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Subjt:  FTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

A9LYG9 Photosystem II reaction center protein I2.9e-12100Show/hide
Query:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

Q3V550 Photosystem II reaction center protein I2.9e-12100Show/hide
Query:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

Arabidopsis top hitse value%identityAlignment
AT2G07739.1 Ycf1 protein2.1e-0562.5Show/hide
Query:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFVYTVVIFFV
        H ILPSSML RLVNI MFRCNNK+ F    FV  V +  V
Subjt:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFVYTVVIFFV

ATCG00080.1 photosystem II reaction center protein I2.1e-13100Show/hide
Query:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
        TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Subjt:  TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE

ATCG01000.1 Ycf1 protein5.4e-0675Show/hide
Query:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFV
        HFILPSSML RLVNI MFRCNNK+ F    FV
Subjt:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFV

ATCG01130.1 Ycf1 protein5.4e-0675Show/hide
Query:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFV
        HFILPSSML RLVNI MFRCNNK+ F    FV
Subjt:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFV

ATMG00370.1 Ycf1 protein2.1e-0562.5Show/hide
Query:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFVYTVVIFFV
        H ILPSSML RLVNI MFRCNNK+ F    FV  V +  V
Subjt:  HFILPSSMLVRLVNISMFRCNNKINFTLKLFVYTVVIFFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAATCTTCACACAATGCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATTAACTTCACTCTCAAACT
ATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAATCTTCACACAATGCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATTAACTTCACTCTCAAACT
ATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCTATCTAATGACCCGGGACGTAATCCGGGGCGTGAAGAATAAAAAAATCAGATTTTTT
TTCCTTGCTTGATTTTGAAATGTTCTTAACATTTTATCTATTCCACACCTTTCCTCAACTATAAAAAAATACCAAGTAATTGACAGAAACGGAAAGAGAGGGATTCGAAC
CCTCGGTACAAAAAAATCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCCAAATGGAAAACGGATAATTACTATGATACATTGTATAAAAA
ATAGAAAATAAAGGCTTGAAAAAAGCCCTTCTTTATCTCCCCCCTTTATTATATAGATATATAATTATATTGATATAGATAATTATTTAGATATA
Protein sequenceShow/hide protein sequence
MLNLHTMHFILPSSMLVRLVNISMFRCNNKINFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE