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CsGy2G011460 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G011460
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptiontransportin-1
Genome locationGy14Chr2:11362416..11365466
RNA-Seq ExpressionCsGy2G011460
SyntenyCsGy2G011460
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006606 - protein import into nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR040122 - Importin beta family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045756.1 transportin-1 [Cucumis melo var. makuwa]1.36e-4567.15Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        ++EPVSAG+QYDREFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKEI
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK     S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

KAG7010837.1 Transportin-1, partial [Cucurbita argyrosperma subsp. argyrosperma]8.79e-4664.23Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        +++PVSAG+QYD+EFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKL++I
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK +   S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

KGN61740.2 hypothetical protein Csa_006596 [Cucumis sativus]4.45e-126100Show/hide
Query:  MPFLSPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLV
        MPFLSPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLV
Subjt:  MPFLSPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLV

Query:  SQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        SQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
Subjt:  SQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

XP_004147054.2 transportin-1 [Cucumis sativus]1.06e-4467.15Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        ++EPVSAG+QYDREFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKEI
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK     S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

XP_008457730.1 PREDICTED: transportin-1 [Cucumis melo]1.06e-4467.15Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        ++EPVSAG+QYDREFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKEI
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK     S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

TrEMBL top hitse value%identityAlignment
A0A1S3C7H5 transportin-15.14e-4567.15Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        ++EPVSAG+QYDREFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKEI
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK     S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

A0A5D3BK70 Transportin-16.59e-4667.15Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        ++EPVSAG+QYDREFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKEI
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK     S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

A0A6J1CFY8 transportin-14.60e-4464.96Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        +++PVSAG+QYD+EFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKLKE 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK +   S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

A0A6J1FVN4 transportin-1-like6.29e-4464.23Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        +++PVSAG+QYD+EFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKL++I
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK +   S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

A0A6J1JE95 transportin-1-like4.60e-4464.23Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI
        +++PVSAG+QYD+EFIVCCLDLLS LA+GLGSGIESLVSQSNLRDLLLQCCMDEA DVRQSAFALLGDLGR                     D PKL++I
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGR---------------------DAPKLKEI

Query:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM
        V VANN CWAIGELAVK +   S  +  ++  SLVP+
Subjt:  VYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM

SwissProt top hitse value%identityAlignment
B8ARW2 Transportin-15.6e-3160.68Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAP---------------------KLKEI
        +++P +AG  YD+EFIVC LDLLS LA+GLG+GIESLVSQS+LRD+LLQCCMDEA DVRQSA ALLGDL R  P                      +KE 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAP---------------------KLKEI

Query:  VYVANNFCWAIGELAVK
        V VANN CWAIGELA+K
Subjt:  VYVANNFCWAIGELAVK

B9FDR3 Transportin-15.6e-3160.68Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAP---------------------KLKEI
        +++P +AG  YD+EFIVC LDLLS LA+GLG+GIESLVSQS+LRD+LLQCCMDEA DVRQSA ALLGDL R  P                      +KE 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAP---------------------KLKEI

Query:  VYVANNFCWAIGELAVK
        V VANN CWAIGELA+K
Subjt:  VYVANNFCWAIGELAVK

Q3SYU7 Transportin-14.8e-1443.14Show/hide
Query:  DREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDA------------PKL-----KEIVYVANNFCWAIGELA
        D++F++  LDLLS LA+GLG  IE LV++SN+  L+ QC  D+  +VRQS+FALLGDL +              P L      E + V NN  WAIGE++
Subjt:  DREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDA------------PKL-----KEIVYVANNFCWAIGELA

Query:  VK
        ++
Subjt:  VK

Q8H0U4 Transportin-14.3e-3162.39Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI
        ++ P SAG QYDREFIVC LDLLS LA+GLGSGIESLV QSNLRDLLL CC+DEA DVRQSAFAL+GDL R  P                       +E 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI

Query:  VYVANNFCWAIGELAVK
        + VANN CWAIGELAVK
Subjt:  VYVANNFCWAIGELAVK

Q92973 Transportin-14.8e-1443.14Show/hide
Query:  DREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDA------------PKL-----KEIVYVANNFCWAIGELA
        D++F++  LDLLS LA+GLG  IE LV++SN+  L+ QC  D+  +VRQS+FALLGDL +              P L      E + V NN  WAIGE++
Subjt:  DREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDA------------PKL-----KEIVYVANNFCWAIGELA

Query:  VK
        ++
Subjt:  VK

Arabidopsis top hitse value%identityAlignment
AT2G16950.1 transportin 13.1e-3262.39Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI
        ++ P SAG QYDREFIVC LDLLS LA+GLGSGIESLV QSNLRDLLL CC+DEA DVRQSAFAL+GDL R  P                       +E 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI

Query:  VYVANNFCWAIGELAVK
        + VANN CWAIGELAVK
Subjt:  VYVANNFCWAIGELAVK

AT2G16950.2 transportin 13.1e-3262.39Show/hide
Query:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI
        ++ P SAG QYDREFIVC LDLLS LA+GLGSGIESLV QSNLRDLLL CC+DEA DVRQSAFAL+GDL R  P                       +E 
Subjt:  QIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKL---------------------KEI

Query:  VYVANNFCWAIGELAVK
        + VANN CWAIGELAVK
Subjt:  VYVANNFCWAIGELAVK

AT2G16960.1 ARM repeat superfamily protein5.2e-2455.77Show/hide
Query:  MLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGE
        +L L    +++   AG+QYD+  +VC L+  S L+KGL SGIESLVSQSNLRD+LL+C MDE  DVR+SAFAL+  L + A    E +  ANN C AIGE
Subjt:  MLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGE

Query:  LAVK
        LAVK
Subjt:  LAVK

AT2G16960.2 ARM repeat superfamily protein1.6e-0942.71Show/hide
Query:  SLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRD-----APKLKEIVYV----------------ANNFCWAIGELAVKGYYSFSRKLKHIVH
        S VSQSNLRD+LL+C MDE  DVR+SAFAL+  L +       P+L E + +                ANN C AIGELAVK     S  + ++V+
Subjt:  SLVSQSNLRDLLLQCCMDEALDVRQSAFALLGDLGRD-----APKLKEIVYV----------------ANNFCWAIGELAVKGYYSFSRKLKHIVH

AT4G37180.2 Homeodomain-like superfamily protein1.7e-0642.86Show/hide
Query:  SPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLND
        S P  +  FL  +S + +   + S +   +  LE+E   ID FKRELPLCMLLLN+
Subjt:  SPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTCCTTTCTCCTCCCAACACCATCCCTGACTTTCTCCATCACATTTCCTCTCTTTCCAATCCCTTAGATAGGGCTTCTAGACTCCATTCTCTTATCACCAACTT
GGAGGATGAAATGAAGATGATTGATGCCTTCAAGCGCGAGCTTCCCTTGTGTATGCTTCTCTTGAATGATGGGCCTCAAATTGAGCCTGTTTCTGCTGGGATTCAGTATG
ATAGAGAGTTCATTGTGTGCTGTCTTGATCTTCTTTCAGTACTTGCAAAAGGTCTTGGCAGTGGAATTGAAAGCTTGGTTTCTCAAAGCAATTTGAGGGACTTGCTCTTG
CAATGCTGCATGGATGAAGCTTTGGATGTCCGACAGAGTGCCTTTGCATTGCTTGGGGATCTTGGAAGAGATGCTCCTAAGCTGAAGGAAATTGTTTATGTGGCAAACAA
TTTCTGCTGGGCAATTGGAGAATTAGCTGTTAAGGGTTATTATAGCTTTAGCCGGAAATTAAAGCATATTGTTCATCCGTCTCTAGTTCCCATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTCCTTTCTCCTCCCAACACCATCCCTGACTTTCTCCATCACATTTCCTCTCTTTCCAATCCCTTAGATAGGGCTTCTAGACTCCATTCTCTTATCACCAACTT
GGAGGATGAAATGAAGATGATTGATGCCTTCAAGCGCGAGCTTCCCTTGTGTATGCTTCTCTTGAATGATGGGCCTCAAATTGAGCCTGTTTCTGCTGGGATTCAGTATG
ATAGAGAGTTCATTGTGTGCTGTCTTGATCTTCTTTCAGTACTTGCAAAAGGTCTTGGCAGTGGAATTGAAAGCTTGGTTTCTCAAAGCAATTTGAGGGACTTGCTCTTG
CAATGCTGCATGGATGAAGCTTTGGATGTCCGACAGAGTGCCTTTGCATTGCTTGGGGATCTTGGAAGAGATGCTCCTAAGCTGAAGGAAATTGTTTATGTGGCAAACAA
TTTCTGCTGGGCAATTGGAGAATTAGCTGTTAAGGGTTATTATAGCTTTAGCCGGAAATTAAAGCATATTGTTCATCCGTCTCTAGTTCCCATGTAG
Protein sequenceShow/hide protein sequence
MPFLSPPNTIPDFLHHISSLSNPLDRASRLHSLITNLEDEMKMIDAFKRELPLCMLLLNDGPQIEPVSAGIQYDREFIVCCLDLLSVLAKGLGSGIESLVSQSNLRDLLL
QCCMDEALDVRQSAFALLGDLGRDAPKLKEIVYVANNFCWAIGELAVKGYYSFSRKLKHIVHPSLVPM