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CsGy2G014305 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G014305
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr2:14563182..14563484
RNA-Seq ExpressionCsGy2G014305
SyntenyCsGy2G014305
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045802.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.34e-5089Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVV+WGALL ACR YG+VDIANIILKQ+LELETDSS GLYVLLSNIYFEA RWK+AKNVRKLMSGHG IKC AVSFVEIDECI+
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

XP_008457803.1 PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo]6.18e-5189Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVV+WGALL ACR YG+VDIANIILKQ+LELETDSS GLYVLLSNIYFEA RWK+AKNVRKLMSGHG IKC AVSFVEIDECI+
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

XP_022971672.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita maxima]2.78e-4681.82Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        +LQEA+KLIGGMPMKPDVVVWGA+L ACR YGNVDI N ILKQVLELET  SSGLYVLLSNIYFEA RWK+ KN+RKLM+ HG IKC AVSF+EIDECI
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI

XP_023512538.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita pepo subsp. pepo]1.29e-4580.81Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        +LQEA+KLIGGMPMKPDVVVWGA+L ACR YGNVDI N ILKQVLELET  SSGLYVLLSNIYFEA+RWK+ +N+RKLM+ HG IKC AVSF+EIDECI
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI

XP_038900653.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida]2.92e-4785Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVVVWGALL ACR YGNVDIAN ILK VLELET  +SGLYVLLSNIYFEA+RW +AKNVRKLMSGHG IKC AVSF+EID CI+
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

TrEMBL top hitse value%identityAlignment
A0A0A0LJJ6 Uncharacterized protein1.17e-65100Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

A0A1S3C6H9 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like2.99e-5189Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVV+WGALL ACR YG+VDIANIILKQ+LELETDSS GLYVLLSNIYFEA RWK+AKNVRKLMSGHG IKC AVSFVEIDECI+
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

A0A5A7TQY7 Pentatricopeptide repeat-containing protein6.49e-5189Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL
        MLQEAIKLIGGMPMKPDVV+WGALL ACR YG+VDIANIILKQ+LELETDSS GLYVLLSNIYFEA RWK+AKNVRKLMSGHG IKC AVSFVEIDECI+
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL

A0A6J1EJQ7 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like1.33e-4579.8Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        +LQEA+KLIGGMPMKPDVVVWGA+L  CR YGNVDI N ILKQVLELET  SSGLYVLLSNIYFEA+RWK+ +N+RKLM+ HG IKC AVSF+EIDECI
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI

A0A6J1I2L8 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like1.35e-4681.82Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        +LQEA+KLIGGMPMKPDVVVWGA+L ACR YGNVDI N ILKQVLELET  SSGLYVLLSNIYFEA RWK+ KN+RKLM+ HG IKC AVSF+EIDECI
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI

SwissProt top hitse value%identityAlignment
Q9LS72 Pentatricopeptide repeat-containing protein At3g292302.2e-1644.9Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        L+EAIK++  MPM+P+VV+WGALL ACR +  VDIA  +L  +++L+     G Y LLSNIY  AE W+   ++R  M   G  K +  S VE+++ I
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI

Q9LW32 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial2.2e-1643.16Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        LQ+A  LI  M MKPD ++W +LL+ACR + NV++A I + ++ EL++ S+ G Y+LLS+IY +A RWK  + VR +M   G +K    S +E++
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136003.8e-1643.62Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEI
        L+EA  +I  MPM+PD V+WG+LL+AC+ + N+ +   + +++LE+E  S+SG YVLLSN+Y E  +W+   NVRK M   G  K    S+++I
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEI

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial9.9e-1743.75Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        +L+EA +L+  MPM+ D  VWGALL  CR +GNV++     K++LEL+  S SG+YVLL  +Y EA  W+ AK  R++M+  G  K    S +E++
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

Q9SR82 Putative pentatricopeptide repeat-containing protein At3g088202.4e-1542.71Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        ML +A +LI  MPM+P+ +VWGALLS CR   +  +A  +LK+++ LE   ++G YV LSNIY    RW +A  VR +M+  G  K    S++E++
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

Arabidopsis top hitse value%identityAlignment
AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein2.7e-1743.62Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEI
        L+EA  +I  MPM+PD V+WG+LL+AC+ + N+ +   + +++LE+E  S+SG YVLLSN+Y E  +W+   NVRK M   G  K    S+++I
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEI

AT2G22410.1 SLOW GROWTH 17.0e-1843.75Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        +L+EA +L+  MPM+ D  VWGALL  CR +GNV++     K++LEL+  S SG+YVLL  +Y EA  W+ AK  R++M+  G  K    S +E++
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein1.7e-1642.71Show/hide
Query:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        ML +A +LI  MPM+P+ +VWGALLS CR   +  +A  +LK+++ LE   ++G YV LSNIY    RW +A  VR +M+  G  K    S++E++
Subjt:  MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

AT3G26782.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.6e-1743.16Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID
        LQ+A  LI  M MKPD ++W +LL+ACR + NV++A I + ++ EL++ S+ G Y+LLS+IY +A RWK  + VR +M   G +K    S +E++
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEID

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.6e-1744.9Show/hide
Query:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI
        L+EAIK++  MPM+P+VV+WGALL ACR +  VDIA  +L  +++L+     G Y LLSNIY  AE W+   ++R  M   G  K +  S VE+++ I
Subjt:  LQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGGAAGCAATAAAACTCATTGGAGGAATGCCAATGAAGCCCGATGTCGTTGTGTGGGGTGCTTTGCTTAGTGCTTGTAGGGCTTATGGAAATGTAGACATTGC
GAATATAATCTTGAAGCAGGTACTAGAGTTGGAGACAGATAGTAGTTCCGGGCTCTATGTTCTTCTATCGAACATATATTTTGAAGCAGAGAGATGGAAGAAAGCAAAAA
ATGTAAGAAAGCTGATGAGTGGCCATGGGTTCATCAAGTGTAACGCTGTTAGCTTTGTTGAGATTGATGAGTGTATTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGGAAGCAATAAAACTCATTGGAGGAATGCCAATGAAGCCCGATGTCGTTGTGTGGGGTGCTTTGCTTAGTGCTTGTAGGGCTTATGGAAATGTAGACATTGC
GAATATAATCTTGAAGCAGGTACTAGAGTTGGAGACAGATAGTAGTTCCGGGCTCTATGTTCTTCTATCGAACATATATTTTGAAGCAGAGAGATGGAAGAAAGCAAAAA
ATGTAAGAAAGCTGATGAGTGGCCATGGGTTCATCAAGTGTAACGCTGTTAGCTTTGTTGAGATTGATGAGTGTATTTTATAG
Protein sequenceShow/hide protein sequence
MLQEAIKLIGGMPMKPDVVVWGALLSACRAYGNVDIANIILKQVLELETDSSSGLYVLLSNIYFEAERWKKAKNVRKLMSGHGFIKCNAVSFVEIDECIL