; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G016690 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G016690
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationGy14Chr2:27024055..27030524
RNA-Seq ExpressionCsGy2G016690
SyntenyCsGy2G016690
Gene Ontology termsGO:0006363 - termination of RNA polymerase I transcription (biological process)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR012164 - DNA-directed RNA polymerase subunit/transcription factor S


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598510.1 DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia]1.31e-5568.49Show/hide
Query:  LVTGSRPDKSSLGRKLSGNRQAPLMAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVG
        L + SRPDKSSL  +  G    P MAYSRGHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+K   
Subjt:  LVTGSRPDKSSLGRKLSGNRQAPLMAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVG

Query:  ENKVYVWYSILLEIQSTNMKLCDVWQERRRCEKCGNDEAWFESRQV
                                  ERRRCEKCGNDEAWFESRQ+
Subjt:  ENKVYVWYSILLEIQSTNMKLCDVWQERRRCEKCGNDEAWFESRQV
XP_004143007.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus]1.89e-5375.41Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAK                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
XP_008445334.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo]5.72e-5072.13Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLGISLI EEKMQLAK                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
XP_022144336.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia]8.11e-5071.31Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLGISLIDEEK+QL+K                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
XP_023546814.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo]1.42e-5072.95Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+K                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
TrEMBL top hitse value%identityAlignment
A0A0A0LKC4 DNA-directed RNA polymerase subunit9.13e-5475.41Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAK                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
A0A1S3BBZ4 DNA-directed RNA polymerase subunit2.77e-5072.13Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKS+RSAKEI GREISYTVTAEEIRKQLGISLI EEKMQLAK                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
A0A6J1CTE6 DNA-directed RNA polymerase subunit3.93e-5071.31Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLGISLIDEEK+QL+K                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
A0A6J1HDS4 DNA-directed RNA polymerase subunit7.88e-5072.13Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYS GHDFLFCNLCGTMLSF STKYVECP CKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQL+K                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
B3FNK6 DNA-directed RNA polymerase subunit5.56e-5072.13Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        MAYSRGHDFLFCNL GTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEI+KQLGISLIDE  MQLAK                           
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQV
          ERRRCEKCGNDEAWFESRQ+
Subjt:  WQERRRCEKCGNDEAWFESRQV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20065.1 FUNCTIONS IN: molecular_function unknown9.4e-1659.68Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGIS
        M  SR  D LFCNLCGTML   STKY ECP C++ R+ KEI+ + ++YTVT E+IR++LGIS
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGIS
AT1G20065.2 FUNCTIONS IN: molecular_function unknown4.8e-1258.49Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAE
        M  SR  D LFCNLCGTML   STKY ECP C++ R+ KEI+ + ++YTVT E
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAE
AT3G25940.1 TFIIB zinc-binding protein1.2e-1841.32Show/hide
Query:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV
        M  SR  +FLFCNLCGTML   STKY ECP CK+ R+AK+I+ +EI+YTV+AE+IR++LGISL  E+    A++                          
Subjt:  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDV

Query:  WQERRRCEKCGNDEAWFESRQ
         + ++ CEKC + E  + +RQ
Subjt:  WQERRRCEKCGNDEAWFESRQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCGTTAGGCCCAACCCTATGTAATGGCGTATGGGAAAATAATGGAAAACCAAATTCTCTTGAAGGAAAAAAGAAAAGCAAAACCCTATTTTCTCACCTTCTAGC
CCCAGGCCTTCGTGATTTTTCAGACTTACCTTTCTTGCTGGTTCGTCACCCGCCTCCGCCGCTCGTTACTGGATCTCGCCCCGACAAGTCGTCTCTAGGTAGGAAGCTAT
CGGGGAACCGGCAAGCACCACTCATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGCGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGT
CCTTCGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCGTCGGTAGAGAAATAAGTTACACAGTAACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCATTAATTGATGA
AGAGAAAATGCAGTTAGCAAAGGTAGTAGGAGAAAATAAGGTGTATGTATGGTATTCAATTTTGCTTGAGATACAGTCCACTAATATGAAGCTTTGTGATGTTTGGCAGG
AAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAATTAGAATTGTGGGTTATTTAGGGTTTATT
TCTGTCTTTTCTTCCATTAGAAAGAGTAATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGA
mRNA sequenceShow/hide mRNA sequence
AGTATTTATGTGCTACGGTTTCCTATGGTTTCGTTAGGCCCAACCCTATGTAATGGCGTATGGGAAAATAATGGAAAACCAAATTCTCTTGAAGGAAAAAAGAAAAGCAA
AACCCTATTTTCTCACCTTCTAGCCCCAGGCCTTCGTGATTTTTCAGACTTACCTTTCTTGCTGGTTCGTCACCCGCCTCCGCCGCTCGTTACTGGATCTCGCCCCGACA
AGTCGTCTCTAGGTAGGAAGCTATCGGGGAACCGGCAAGCACCACTCATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGCGGAACCATGTTGTCGTTC
TGCTCAACGAAATATGTTGAGTGTCCTTCGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCGTCGGTAGAGAAATAAGTTACACAGTAACTGCTGAGGAAATTAGAAAGCA
GTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGTTAGCAAAGGTAGTAGGAGAAAATAAGGTGTATGTATGGTATTCAATTTTGCTTGAGATACAGTCCACTAATA
TGAAGCTTTGTGATGTTTGGCAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACATTAACAAAATTAGA
ATTGTGGGTTATTTAGGGTTTATTTCTGTCTTTTCTTCCATTAGAAAGAGTAATAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGCCAGA
CCACATTTTATACCTGCACTAAATGTCATCATCAGACTAGAGAGAATTGATCTTCCATATAACTTTTTTTAGGATGTCACATTTATTCATCCTTGAATTAGTTGGATTGG
AATCCAAAAGCTTTAACATGATGAGTTATGTTCTTAAACAATTAAACTTGATCTGTATGGAATGATTAATCTGAGAATATGACAGAAGTGGCAAAATTTGTTGATTGATT
TGATTTGGTAGTAATTTTGTTTCTAGTTTTGGTAGTAATATCTAAGAATATGACGAGATTCACTCCATCGGCCTTTTTTGTTTTAGACCAATTTATTTTGTGTGTAGATT
TGAATTTGAGGACATAATTTATTTTAAACTAGTCCAAGAGGCCCCCTAAAGATCCAATTCATGTAGGGAAAAAGAGACTTTAGAAGCCCTATCTTCTAATTTGTCCTTGA
AAATATGTATTGGTATGGTTTTTCTAAAAAACAAAAATCAAAATTTTTAATTGTCTTTGAGAGAGGTCATGTTTTTTTTCTATAAAACATCATAATCTTCGTAATATTAG
GCTTTAAAAAGGTGTGCATTGTGTTTGTTTATATTGGTTTTGTAAGCCATTTTTTCAAATTACAAATTTAGACTTACGGTGTGTTTGACACCAAAGGATTTTGAGAGTAA
GAACAAGGACGTATATAGTTATGAACTAAATAGGTTTCACCATAAAAAAAACATCAATTTTATATGAAAAACACATACTTACAAATCAAAGTTGAGAGAGCACCATGACC
ATTTTTAACCATCTTCTTTGTTGAATTACAACAAGCCATAATGTACTTTAAACCCTAATGTGTGTACTTTAAAGGTAAGTAGAGATTTTCAGATTTTGGTTTGTTCACCT
CCCCATTTCAAAAAAACCCAGGTGGTGATCACAAAAACCACACACAAACAAATACCTTTCCAAAAAATCAAACCCTAAAGCTTCTTCCTTCATCGGATGCGCAATAGTCG
CCTCAGATTGTCTGTGGCGCCGGCGTCTACTCCGGAGGCCTCCACGTTACAACCAACCACCTTCCGTCTCAGAGAGAATTTCGGAAGCGGAACGCTACTCGGTGGCGGCG
ATTGGCTGTATGCCGACCCCGAAAACTCAATTTCCGCCGCCGTCTCCCAACTCCGGGTACTTTCGCAAAGCGGCACCGACGGCCGTAATCCTAAAACTGTCAACAAATCT
TTAGGAACGTGGCTCGGCTCCGGCCCCAATCGATTCGTGGAATCAACGATCACTAATTCCACCGTCGATTTCGCCGCCGGTGGACCTCTACTTCGTTTTATTGGTTTTGA
TTTCTTTGGGGTAAGAGATTGGTCTCTGAATTCCATACACTTTGGGCGGGAGGACACTGTGGCCCCGATTTCCGAAGGGGGAAGTGGACGGCGGGGCAAAGGGAGAAGTG
GCGGCTGCTGGTGTTGACGGCAACTGTTATATGAGATTTCCGGCAGAGGGAAGTTAAGAAAACCGCCGTGAACGTTGGCCGGAGAGAAATTTTGAGGATTAAAACCGCGA
GATTGATCAGCAGAAAATGGAATAAAAACTACCTCCATTGCTGCAGTTTACAAAGATCTAAACCTGAAAAAATCAAACAAAAATCAAAACGCTAACGTTAAAAGGGAAAA
AGAAAACAGAGGCCCAATCGAAACAAAAAGATAGAAGATCGTGAAGAAGAAATTCTTATGAATTTGAACCAAAAAAAAAGAAAAAAGGAAGGGTTTCTCTTTTTTTGCAA
AACAGAAACTAATAGAACCCAGAATGTAAAAAAAGTTAGAAAATGTATATGTTTGATTGATTCAAAGAATGGATAATGGGATTTTTCAGCAACCCATCTACAGAGGAAAC
GTTAGCGATTAAAATTGTAAGAGAAGACTTTTCAATTGGTCTTTGGGTTTGGATTGATCACTTTATAGAGCTTAGTTTTGATGAATGGTAACGGCTACTTTCTTTTTAAT
AGTTTTAATTTGGAGATATTTTGAGTTGTGTTTTAGAAAATGGGAAAATGGGGAATTTACCCACAAGAGCCACCGTCCTTCTTGTTTTGACCGTTGCTTATAGCCGTTGG
ACCCAATCCGACCCTTCATTTCATCTCTTCATCATACTCTTTTTTCTTTTTTCTTTTTTGTATTTCCTTTTAATTATATTTTATATAATTCTTTTTAACATTTAAAACAA
ATACATTTAGTTCAACTATATGAGACCATTAATTCTAAGTTTTCTAGTTTGATTTAACACTATACTATGTCAACAAGTCAAATCTTTGTTTGATGTGAGTATTCAAGTAA
GAATTGTATGCAAAGGAACTAAATAAAATTTTACTACATAGACTAATTGAATCTACTCTAATCATCTTCATAGCTCATGGAAAATGTGTAGCTAGTCATGTTCTTGTGCG
AGGGATTAAGTAGATGAATATTGTAGTTTTGTTAAACAAAATTTGTAAAAAGAGAAATATTTTAGAACTATGTAACAAAATAGTGATGCTGAGACACACTAAGGAAAAGC
AACATAATGTAAAATAATGCAGTGGAGGAAAGAGTTGATACAAATTATAACTCAACACTAATATGTATGACATCCTCATCATTCGGTTTGGCCCAACTTAAGTGGTTTTG
AAGGCATGAGGTC
Protein sequenceShow/hide protein sequence
MVSLGPTLCNGVWENNGKPNSLEGKKKSKTLFSHLLAPGLRDFSDLPFLLVRHPPPPLVTGSRPDKSSLGRKLSGNRQAPLMAYSRGHDFLFCNLCGTMLSFCSTKYVEC
PSCKSRRSAKEIVGREISYTVTAEEIRKQLGISLIDEEKMQLAKVVGENKVYVWYSILLEIQSTNMKLCDVWQERRRCEKCGNDEAWFESRQVHFTNINKIRIVGYLGFI
SVFSSIRKSNKFECGLNKNADEIG