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CsGy2G017100 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G017100
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRNA polymerases N / 8 kDa subunit
Genome locationGy14Chr2:27315613..27316533
RNA-Seq ExpressionCsGy2G017100
SyntenyCsGy2G017100
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652040.1 hypothetical protein Csa_018608 [Cucumis sativus]1.65e-14498.98Show/hide
Query:  MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFI
        MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLD+LQADYSEGQVSATRHFI
Subjt:  MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFI

Query:  YILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLVCRNYISELCTIIMLKDG
        YILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLL CRNYISELCTIIMLKDG
Subjt:  YILISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLVCRNYISELCTIIMLKDG

KHN08995.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Glycine soja]3.32e-0551.79Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYN
        IP  CF       C  VIGNKWD YLD+LQADYSEG++  T      LI  L++YN
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYN

KMZ72522.1 DNA-directed RNA polymerase subunit 10-like protein [Zostera marina]1.79e-0643.84Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA
        IP  CF       C  VIGNKWD+YLD+LQADYSEG++  T      LI  L++YN  +        + DP+A
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA

MBA0772788.1 hypothetical protein [Gossypium trilobum]5.32e-0743.66Show/hide
Query:  QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG
        Q+   +DD+PS+LLHLR+G                  F CF+         VIGNKWD YLD+LQADY+EG
Subjt:  QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG

VAH65403.1 unnamed protein product [Triticum turgidum subsp. durum]3.35e-0533.63Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS
        IP  CF       C  VIGNKWDHYLD+LQADY+EG        +             LI  L++YN +       P+RR       P+L  +   +V+S
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS

Query:  QYWRLLKEKIQCM
        + W +     QC+
Subjt:  QYWRLLKEKIQCM

TrEMBL top hitse value%identityAlignment
A0A0A9RSE3 Uncharacterized protein1.65e-0547.54Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHT
        IP  CF       C  VIGNKWD YLD+LQADY+EG++  T      LI  L++YN  + T
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHT

A0A0K9PW88 DNA-directed RNA polymerase subunit 10-like protein8.64e-0743.84Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA
        IP  CF       C  VIGNKWD+YLD+LQADYSEG++  T      LI  L++YN  +        + DP+A
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSYNIQKHTCFTLPFRRDPNA

A0A3B6EK89 Uncharacterized protein1.62e-0533.63Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS
        IP  CF       C  VIGNKWDHYLD+LQADY+EG        +             LI  L++YN +       P+RR       P+L  +   +V+S
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS

Query:  QYWRLLKEKIQCM
        + W +     QC+
Subjt:  QYWRLLKEKIQCM

A0A446NTH6 Uncharacterized protein1.62e-0533.63Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS
        IP  CF       C  VIGNKWDHYLD+LQADY+EG        +             LI  L++YN +       P+RR       P+L  +   +V+S
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYI-----------LISVLVSYNIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWS

Query:  QYWRLLKEKIQCM
        + W +     QC+
Subjt:  QYWRLLKEKIQCM

A0A7J9EIX9 Uncharacterized protein2.58e-0743.66Show/hide
Query:  QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG
        Q+   +DD+PS+LLHLR+G                  F CF+         VIGNKWD YLD+LQADY+EG
Subjt:  QKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.7e-0458.33Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG
        IP  CF       C  VIGNKWD YLD+LQ DY+EG
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG

AT1G61700.1 RNA polymerases N / 8 kDa subunit3.0e-0455.56Show/hide
Query:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG
        +P  CF       C  VIGNKWD YL++LQADY+EG
Subjt:  IPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCG
GGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTGATTG
GAAACAAGTGGGATCATTACCTTGATATTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTAC
AACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGAGTCAGTATTG
GCGTTTACTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTTAATTGCTGATTTTATCAAGGGTTTACTAGTTTGTAGGAATT
ACATATCAGAACTGTGTACTATCATAATGTTGAAAGATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGAAATACCAAAGGGGTCAAACCCTGGTTGGGATCGAGGCACGTAGGGTTGTGCAGAAAGCAGAAAGCGAAGATGATCATCCCAGTGCGTTGCTTCACTTGCG
GGAAGGTAAGCTATGGACAACCATATTCAACATTGAGTTAAAGTTTCTTCTCAGAATTCCATTTTCCTGTTTTCTCTATCCTTCTATGTCCCACTGTCTTTGGGTGATTG
GAAACAAGTGGGATCATTACCTTGATATTCTACAGGCCGATTATTCAGAAGGGCAAGTGAGTGCAACACGTCACTTCATTTACATTTTGATTTCCGTCTTGGTTTCTTAC
AACATCCAAAAGCATACCTGTTTTACCTTGCCTTTTAGAAGAGATCCTAATGCATTTACTTTTCCCGTATTAGGGATGCACTTGATGCACTGGGTCTGGAGTCAGTATTG
GCGTTTACTTAAAGAGAAGATTCAGTGCATGACTCGAGTTGAGCTGTGTCTTGGTGTCCCGCTCTGTTTAATTGCTGATTTTATCAAGGGTTTACTAGTTTGTAGGAATT
ACATATCAGAACTGTGTACTATCATAATGTTGAAAGATGGTTAG
Protein sequenceShow/hide protein sequence
MEKKYQRGQTLVGIEARRVVQKAESEDDHPSALLHLREGKLWTTIFNIELKFLLRIPFSCFLYPSMSHCLWVIGNKWDHYLDILQADYSEGQVSATRHFIYILISVLVSY
NIQKHTCFTLPFRRDPNAFTFPVLGMHLMHWVWSQYWRLLKEKIQCMTRVELCLGVPLCLIADFIKGLLVCRNYISELCTIIMLKDG