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CsGy2G024580 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G024580
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationGy14Chr2:32311917..32315981
RNA-Seq ExpressionCsGy2G024580
SyntenyCsGy2G024580
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal
IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]4.17e-6796.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

XP_004138655.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]1.51e-69100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_008441202.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]5.07e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_022133819.1 transcription initiation factor IIA subunit 2 [Momordica charantia]1.02e-6796.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDA+FKNEDS ENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]3.57e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDA+FKNEDSSE+VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LMF8 Transcription initiation factor IIA subunit 27.31e-70100Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2F6 Transcription initiation factor IIA subunit 22.45e-6897.17Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+KGHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1BWA2 Transcription initiation factor IIA subunit 24.95e-6896.23Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDA+FKNEDS ENVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1FTM1 Transcription initiation factor IIA subunit 22.87e-6795.28Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 22.87e-6795.28Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVT+KGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 21.0e-4887.74Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++KGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 28.6e-2753.54Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++T KGHL TYRFCD VWTFI+++ SF+ ++ +    +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 21.0e-4887.74Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV++KGHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 24.7e-4988.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q54ND1 Transcription initiation factor IIA subunit 24.7e-2555.45Show/hide
Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNE-DSSENVGRIKIVACDSK
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K T KG LHTYRFCD+VWTFIL++A FK E +    V R+KIVACD+ 
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNE-DSSENVGRIKIVACDSK

Query:  L
        +
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)3.3e-5088.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)3.3e-5088.68Show/hide
Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV++KGHLHTYRFCDNVWTFILQDA FK++D  ENV R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTTTGAACTCTACCGCAGATCAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGT
TCTTGTCCAGTTCGATAAGTCGATGACTGAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTGCAGGATGCGTCGTTTAAAAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAA
mRNA sequenceShow/hide mRNA sequence
AGAAAGCCCTAACAAAATTAATTCTCCCTCTCTTTTGCGTGGAACAGCCCCCACTTTGAACTTTCAGCCGGCCAAGAAATCCTCTCTCCGATGACGATTCGCAGCGACTA
CTAATGACCGAACCACTCTCCGGCATCCCATTTCTGCCTTCATCAACCACGCGAGATTCGTAGTTCCAGCGACGGCGGCGCTTACATCCTCCAGTGGCGGTGACCATCGA
CACCCTGGAAATCCACGCGGTCTGAACACCCTGGAAGCGACGCTTTCCTCCCTTTCGTCAAGGTATTCGACCACCAACAAACACGGATTTGGGTTGTTTTGAGTAAAAAT
TAGCGGTTGGAGCCGGAAAAGAGGTCGTTGGCCTTGGATATATCAGTTAGGGTCAATGGAGATCGTTGGTAGCGTTGGATGAAGTCAACAAAGTTGATGGAGAGTGTTGA
TGATAATGGATAAATCATGTCGGTGCGCCTGGGCACGATTAGCTGGGGTCAACGTGTTTGAGATCTTGATTTCTGAAGAAGAATGGCAACCTTTGAACTCTACCGCAGAT
CAACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTTCAGAACGGTACTCTTAGTCCCGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACT
GAGGCTCTGGAATCACAAGTGAAAAGCAAGGTGACTGTCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCGTCGTTTAA
AAATGAGGATTCCAGTGAGAATGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTGTCACAGTAAGCTCTCATACATCAGGTTTATTCAATGAAATTTGCAT
AGTTATTTGCTGACGATGGAGCGAAGAACATTCACGGTGAGGAGGAAATGACCATCCAGGAAGAGATTCAAACGTGATTCTCTAAAGTCATCAACCCAAACAGCAAAAAG
TTGCATTGACCATACATAGACTGTAACTGGCTTCTAAAGTTGATTGCATAACAATTACACGACCCGGCTTCTAGTTTAACGATAAAATAAAACATGATATGTGTTTCAAT
ACTATGCTATTAATTTCCTTTGAATCTACTTTCTGTACATTAGAAGAATTCAAATTACCACTTCGAAAGGAATAAACTTCATTGGAACTGTTTTCTTATTATTCATTATT
TCAGTATCATTGATGTTAGGTTTGGG
Protein sequenceShow/hide protein sequence
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVKGHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ