; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G025260 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G025260
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTFIIIC_sub6 domain-containing protein
Genome locationGy14Chr2:32750807..32755150
RNA-Seq ExpressionCsGy2G025260
SyntenyCsGy2G025260
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019481 - Transcription factor TFIIIC, triple barrel domain
IPR042771 - TFIIIC subunit GTF3C6-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056571.1 general transcription factor 3C polypeptide 6-like [Cucumis melo var. makuwa]8.67e-7181.94Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVEEEAQPS
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS

Query:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS
        ET  CSRE  EPKQAT+KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]9.42e-83100Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        KKELKLVACVHKILKFKLLDSDVPSSIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

XP_016899393.1 PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]3.94e-7592.19Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EPKQAT
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]3.50e-6373.55Show/hide
Query:  SITACFKALMILKIEEASLRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEE
        ++ A  K L +L IE  S+RNMEKA IDSASD EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEE
Subjt:  SITACFKALMILKIEEASLRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEE

Query:  EAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDS------DVPSSIS
        EA PSET R S + VEP QA +++LK VA VHKILKFKLLDS       VP S S
Subjt:  EAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDS------DVPSSIS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]8.47e-7088.28Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKATIDSA DVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA+PSE+ R SRE  EPKQA 
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK VA VHKILKFKLLDS VP+SIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

TrEMBL top hitse value%identityAlignment
A0A0A0LML8 TFIIIC_sub6 domain-containing protein1.86e-8299.22Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEP+QAT
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        KKELKLVACVHKILKFKLLDSDVPSSIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like1.91e-7592.19Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EPKQAT
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

A0A5A7USU8 General transcription factor 3C polypeptide 6-like4.20e-7181.94Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS
        MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVEEEAQPS
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS

Query:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS
        ET  CSRE  EPKQAT+KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS

A0A6J1FF13 uncharacterized protein LOC1114451211.69e-6373.55Show/hide
Query:  SITACFKALMILKIEEASLRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEE
        ++ A  K L +L IE  S+RNMEKA IDSASD EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEE
Subjt:  SITACFKALMILKIEEASLRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEE

Query:  EAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDS------DVPSSIS
        EA PSET R S + VEP QA +++LK VA VHKILKFKLLDS       VP S S
Subjt:  EAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDS------DVPSSIS

A0A6J1JTZ1 uncharacterized protein LOC1114897253.07e-6180.15Show/hide
Query:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT
        MEKA IDSASD EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PS+T R S + VEP QA 
Subjt:  MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDS---DVPSSIS
        +K+LK VA VHKILKFKLLDS    VP S S
Subjt:  KKELKLVACVHKILKFKLLDS---DVPSSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80745.1 Transcription factor TFIIIC, tau55-related protein7.3e-1744.64Show/hide
Query:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACV
        +E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F+++                      + +   KK ++ VA +
Subjt:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACV

Query:  HKILKFKLLDSD
        HKILKF+L   D
Subjt:  HKILKFKLLDSD

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein2.1e-1949.12Show/hide
Query:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACV
        +EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+E+E     E   P                 KK ++ VA +
Subjt:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACV

Query:  HKILKFKL--LDSD
        HKILKF+L  LD+D
Subjt:  HKILKFKL--LDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGAAACCAATCCAGTTTGCTGAGTTCACTTCAATCACTGCTTGTTTTAAAGCCCTGATGATCTTGAAGATTGAAGAGGCGTCTCTAAGGAACATGGAAAAAGC
TACAATTGATTCCGCCTCTGATGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGGTTTGG
ACACCATGAATCCAGTGTTGACTATCTGTGATAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTT
GAAGAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCT
TAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGAAACCAATCCAGTTTGCTGAGTTCACTTCAATCACTGCTTGTTTTAAAGCCCTGATGATCTTGAAGATTGAAGAGGCGTCTCTAAGGAACATGGAAAAAGC
TACAATTGATTCCGCCTCTGATGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGGTTTGG
ACACCATGAATCCAGTGTTGACTATCTGTGATAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTT
GAAGAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCT
TAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAG
Protein sequenceShow/hide protein sequence
MMLKPIQFAEFTSITACFKALMILKIEEASLRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVV
EEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS