; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G025410 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G025410
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCoilin
Genome locationGy14Chr2:32879196..32881010
RNA-Seq ExpressionCsGy2G025410
SyntenyCsGy2G025410
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR024822 - Coilin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652266.1 hypothetical protein Csa_022487 [Cucumis sativus]5.94e-15994.47Show/hide
Query:  MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVT
        MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPS NDDVDMDDDTVPVVVKPGHIRFEPVGK          VVT
Subjt:  MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVT

Query:  DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVG
        DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVG
Subjt:  DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVG

Query:  HARFAKWNNQVMLAVLIKLQFSFPKSQLILYGPIS
        HARFAKWNNQV LAVLIKL FSFPKSQLILYGPIS
Subjt:  HARFAKWNNQVMLAVLIKLQFSFPKSQLILYGPIS

TYK15659.1 coilin isoform X1 [Cucumis melo var. makuwa]1.46e-8787.65Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

XP_031736546.1 coilin-like isoform X1 [Cucumis sativus]1.41e-11092.94Show/hide
Query:  MDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVP
        MDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVP
Subjt:  MDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVP

Query:  VVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVMLAVLIKLQFSFPKSQLILYGPIS
        VVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQV LAVLIKL FSFPKSQLILYGPIS
Subjt:  VVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVMLAVLIKLQFSFPKSQLILYGPIS

XP_031741125.1 coilin isoform X1 [Cucumis sativus]3.46e-9190.8Show/hide
Query:  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG
        VPSRSTRRKK KRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEKQNHF KETLHWNG
Subjt:  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG

Query:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        ITNKKKGQKWGKEK+PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

XP_031741126.1 coilin isoform X2 [Cucumis sativus]4.48e-8889.57Show/hide
Query:  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG
        VPSRSTRRKK KRRWLRERAQNEEQQ  LFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEKQNHF KETLHWNG
Subjt:  VPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG

Query:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        ITNKKKGQKWGKEK+PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

TrEMBL top hitse value%identityAlignment
A0A1S3BF15 Coilin1.27e-8787.65Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A1S3BF70 Coilin1.62e-8486.42Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KRRWLRERAQNEEQQ  LFET+L+QGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A5A7ST29 Coilin1.30e-8787.65Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A5D3CZQ0 Coilin7.05e-8887.65Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KRRWLRERAQNEEQQQQLFET+L+QGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A6J1H0F7 Coilin4.06e-7679.14Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKK KR+WLRERAQ+EEQQQQLFETS+ QGPS NDDVDMD+DTVPVVVKPGHIRFEPVGK          V  D AGQ+KQNHF KETLHWNGI
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+ EPLQL  SETEQP TP PVVG I+FDEL P TGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ

SwissProt top hitse value%identityAlignment
Q8RWK8 Coilin1.4e-1334.22Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR
        PSRS RRKK KR+WLRE+ + E  +++L +T L   PSQ   + +D                         D+ VPV V+PGHIRF+P            
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR

Query:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG
        L  TD+A  + +   L E + WNG   KKKGQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Subjt:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG

Arabidopsis top hitse value%identityAlignment
AT1G13030.1 sphere organelles protein-related1.0e-1434.22Show/hide
Query:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR
        PSRS RRKK KR+WLRE+ + E  +++L +T L   PSQ   + +D                         D+ VPV V+PGHIRF+P            
Subjt:  PSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR

Query:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG
        L  TD+A  + +   L E + WNG   KKKGQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Subjt:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAG
GGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCAAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGG
TAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCAT
TTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAG
CAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGG
TTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCATGTTAGCAGTTCTCATTAAATTACAG
TTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGACAAAAAGGCGTTGGTTGAG
GGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCAAAATGATGATGTTGATATGGATGATGACACTGTTCCTGTGG
TAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCAT
TTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAG
CAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGG
TTTGGTTTGCACAGATAGCTTCCATTTGCTTTCTTAAGTGTTTAGTTGGGCATGCACGTTTTGCGAAGTGGAATAATCAAGTCATGTTAGCAGTTCTCATTAAATTACAG
TTTTCATTTCCCAAGTCCCAACTTATTCTTTATGGCCCAATTTCATAA
Protein sequenceShow/hide protein sequence
MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKTKRRWLRERAQNEEQQQQLFETSLEQGPSQNDDVDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNH
FLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVWFAQIASICFLKCLVGHARFAKWNNQVMLAVLIKLQ
FSFPKSQLILYGPIS