; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G025740 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G025740
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationGy14Chr2:33201676..33203549
RNA-Seq ExpressionCsGy2G025740
SyntenyCsGy2G025740
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]1.13e-8189.73Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQ
        MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQ
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQ

Query:  CAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        CAKDAMDGKA   RPL+ISFAL+KVRG PV VPRLSNINNLVGRRS
Subjt:  CAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

XP_008455929.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]2.29e-9290Show/hide
Query:  IIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR
        +I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR
Subjt:  IIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR

Query:  GFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        GFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRRS
Subjt:  GFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.88e-7982.67Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG
        MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N 
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG

Query:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        +DAQ AKDAMDGKA+LGRPLRISFALDKVRG PVVVPRLSNINN++GRRS
Subjt:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]4.41e-7882Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG
        MSNTNT + L R+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNF N 
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG

Query:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        +DAQ AKDAMDGKA+LGRPLRISFALDKVRG PVVVPRLSNINN+ GRRS
Subjt:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

XP_031736490.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]8.11e-10999.39Show/hide
Query:  MRFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD
        M FVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD
Subjt:  MRFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKD

Query:  SGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR
        SGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR
Subjt:  SGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein4.40e-97100Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC
        MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC

Query:  AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR
        AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR
Subjt:  AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial1.11e-9290Show/hide
Query:  IIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR
        +I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR
Subjt:  IIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR

Query:  GFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        GFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRRS
Subjt:  GFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

A0A5D3CH06 Glycine-rich RNA-binding protein 35.47e-8289.73Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQ
        MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQ
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQ

Query:  CAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        CAKDAMDGKA   RPL+ISFAL+KVRG PV VPRLSNINNLVGRRS
Subjt:  CAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like9.78e-7781.33Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG
        MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N 
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG

Query:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        +DAQ AKDAMDGKA+LGRPLRISFALDKVRG PVV+PRLSNIN + GRRS
Subjt:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like9.08e-8082.67Show/hide
Query:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG
        MSN N  +LLAR+ALTNIQTP L FRCFCSQS+S  SS+PS     PNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N 
Subjt:  MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-----PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANG

Query:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS
        +DAQ AKDAMDGKA+LGRPLRISFALDKVRG PVVVPRLSNINN++GRRS
Subjt:  NDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS

SwissProt top hitse value%identityAlignment
P98179 RNA-binding protein 34.0e-1546.51Show/hide
Query:  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        S   KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +R+  A    RG
Subjt:  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial5.6e-1744.05Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A  A+DG+ + GR +++++A D+  G
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial3.0e-1850.55Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK
        TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK + GR +R++ A ++
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial2.5e-1747.25Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK
        TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK + GR +R++ A D+
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK

W8E7I1 RNA-binding protein 32.4e-1547.67Show/hide
Query:  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        S   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A  A  AM+G+++ GR +R+  A    RG
Subjt:  SPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.5e-3878.57Show/hide
Query:  SSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRL
        SSS SP++KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+FA   DA  AKDAMDGK +LGRPLRISFAL++VRG PVVVPRL
Subjt:  SSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRL

AT3G23830.1 glycine-rich RNA-binding protein 42.1e-1950.55Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK
        TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK + GR +R++ A ++
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK

AT3G23830.2 glycine-rich RNA-binding protein 42.1e-1950.55Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK
        TS L S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK + GR +R++ A ++
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK

AT4G13850.1 glycine-rich RNA-binding protein 21.8e-1847.25Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK
        TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK + GR +R++ A D+
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDK

AT4G13850.4 glycine-rich RNA-binding protein 28.0e-1946.81Show/hide
Query:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        TS L S    + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK + GR +R++ A D+  G
Subjt:  TSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTGTATTTGTAATAATAGCAAACACTCGATCACAAGCAATAACCAATGCAACGATGAGCAACACCAACACCTTCCTACTGCTTGCCAGAAAAGCACTAACCAA
TATCCAAACTCCATTTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCCCTCTCTCATCTTCTCCTTCTCCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGT
CCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTG
AACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGA
ACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTGTATTTGTAATAATAGCAAACACTCGATCACAAGCAATAACCAATGCAACGATGAGCAACACCAACACCTTCCTACTGCTTGCCAGAAAAGCACTAACCAA
TATCCAAACTCCATTTCTTGGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCCCTCTCTCATCTTCTCCTTCTCCAAACAATAAGCTCTTCGTAGCAGGCTTGTCTTGGT
CCATGGACGAGAGATCATTGAAAGATGCCTTTTCTTCCTTTGGGGAGGTCACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTG
AACTTCGCAAATGGAAATGATGCCCAGTGTGCAAAAGATGCAATGGACGGAAAGGCAGTATTAGGGCGGCCATTGAGAATAAGCTTTGCCCTTGACAAGGTCCGTGGAGA
ACCTGTTGTCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTAAAGCTCTTGGTGTTCCATCTACATGTTGCATGAATCTCTAATCTTGAACTGTT
CAATTCCTACTTCTAAATCTGATTTAGATCCTTGACTTGGTTTTCCAGGTATGGAAACCAACAGTATGAAGGAACCTCAAGTTAGTATTGTTTGATAATCGCAGAGAAAT
ATGATATCAATTTCTTTATTTGTATGCTCCTATATCCAAATATTTGGAAGAGACGAGGGAACAAAATTCCTGTAGCAGTAATCATGATTTATTTTTTATCAAGTCATGAT
AGATAGTTCCC
Protein sequenceShow/hide protein sequence
MRFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPSPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV
NFANGNDAQCAKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRRS