; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy2G026000 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy2G026000
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionhigh mobility group B protein 3-like
Genome locationGy14Chr2:33532681..33534121
RNA-Seq ExpressionCsGy2G026000
SyntenyCsGy2G026000
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604859.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]6.75e-5580.17Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK
        MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNLVIKLFPL
        AEYEIALE YK  LV   F L
Subjt:  AEYEIALEAYKNNLVIKLFPL

XP_008455869.1 PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]6.03e-5988.14Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEK
        MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEK

Query:  ALKRKAEYEIALEAYKNN
        ALKRKAEYEIALEAYKNN
Subjt:  ALKRKAEYEIALEAYKNN

XP_008455870.1 PREDICTED: high mobility group B protein 1-like isoform X2 [Cucumis melo]6.00e-6294.55Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNN
        EIALEAYKNN
Subjt:  EIALEAYKNN

XP_011650215.2 high mobility group B protein 3-like isoform X1 [Cucumis sativus]8.40e-113100Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNNLVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL
        EIALEAYKNNLVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL
Subjt:  EIALEAYKNNLVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL

XP_031737208.1 high mobility group B protein 3-like isoform X2 [Cucumis sativus]1.23e-67100Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNNL
        EIALEAYKNNL
Subjt:  EIALEAYKNNL

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X12.92e-5988.14Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEK
        MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDA        EKAPYAEK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDA--------EKAPYAEK

Query:  ALKRKAEYEIALEAYKNN
        ALKRKAEYEIALEAYKNN
Subjt:  ALKRKAEYEIALEAYKNN

A0A1S3C2L9 high mobility group B protein 1-like isoform X22.90e-6294.55Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY
        MRALRNAVVTHKKPN QKLKQRKAEMKSTKSKKKDQNAPKRPAT FFVFMEEFR  +KEQFPDAKAGPVVGK GGEKWKSMSDAEKAPYAEKALKRKAEY
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEY

Query:  EIALEAYKNN
        EIALEAYKNN
Subjt:  EIALEAYKNN

A0A6J1CIL2 high mobility group B protein 3-like2.65e-5179.82Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK
        MRA RNAV+  KKPN + LKQRKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKS+SDAEKAPYAEKAL RK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNL
         EY IALEAYK  L
Subjt:  AEYEIALEAYKNNL

A0A6J1G5W3 high mobility group B protein 3-like5.19e-5482.46Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK
        MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNL
        AEYEIALE YK  L
Subjt:  AEYEIALEAYKNNL

A0A6J1I4V5 high mobility group B protein 3-like5.19e-5482.46Show/hide
Query:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK
        MRAL+NAVVTHKKPN + LK+RKAEMKSTKS K   KDQNAPKRPAT FF+FMEEFRKT+KE+FPDAKAGP VGK GGEKWKSMSDAEKAPYAEK+L RK
Subjt:  MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKK---KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRK

Query:  AEYEIALEAYKNNL
        AEYEIALE YK  L
Subjt:  AEYEIALEAYKNNL

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 11.3e-2158.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

O49596 High mobility group B protein 26.1e-1957.32Show/hide
Query:  KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K+  KD N PKRPA+ FFVFME+FR+T+K++ P  K+   VGK  G+KWKS+SD+EKAPY  KA KRK EYE  ++AY   L
Subjt:  KSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

P40619 HMG1/2-like protein1.5e-2056.25Show/hide
Query:  KKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY
        K  N   +K++ A+ K TK   KD N PKRP + FFVFME+FRKTYKE+ P+ K+  VVGK GG+KWK ++ AEKAP+  KA KRK EYE  L+AY
Subjt:  KKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAY

P40620 HMG1/2-like protein5.2e-1853.33Show/hide
Query:  KAEMKSTKSKK-KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K   K  K K+ KD N PKRP + FFVFM +FR+ YK+  P+ K+   VGK  GE+WKS+S+ EKAPY ++ALK+K EYEI L+AY   L
Subjt:  KAEMKSTKSKK-KDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

P93047 High mobility group B protein 38.5e-2157.45Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  ++AY   L
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

Arabidopsis top hitse value%identityAlignment
AT1G20696.2 high mobility group B33.2e-2358.16Show/hide
Query:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKL
        KL   K   K  K   KD N PKRP++ FFVFME+FR TYKE+ P  K+   VGK GGEKWKS+SD+EKAPY  KA KRK EYE  ++AY   LVI L
Subjt:  KLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNLVIKL

AT3G51880.1 high mobility group B19.4e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

AT3G51880.2 high mobility group B19.4e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

AT3G51880.3 high mobility group B19.4e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL

AT3G51880.4 high mobility group B19.4e-2358.7Show/hide
Query:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL
        K  K E +  K  KKD N PKR  + FFVF+E+FR T+K++ P+ KA   VGK GG+KWKSMS AEKAPY EKA KRKAEYE  ++AY  NL
Subjt:  KQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAA
TGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTG
GTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAAC
CTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAA
CATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCTCTCAGGAACGCCGTCGTCACTCACAAGAAACCCAACCCACAGAAGCTGAAGCAGAGAAAAGCTGAAATGAAATCCACGAAAAGCAAGAAGAAAGATCAAAA
TGCTCCAAAACGTCCAGCTACGACATTCTTCGTTTTCATGGAGGAATTTAGAAAGACGTACAAGGAGCAATTTCCTGATGCAAAAGCTGGTCCAGTGGTCGGCAAAGTTG
GTGGTGAGAAATGGAAGTCCATGTCTGATGCTGAAAAAGCTCCGTATGCTGAAAAAGCTTTGAAAAGAAAGGCAGAGTATGAAATAGCTCTTGAAGCATACAAGAACAAC
CTCGTAATTAAATTGTTCCCACTCTATCTCTACTTTCACTCTTTCTCCTTCACTTCGTCAGAAGATGATCACCACGGTTTTATTGATCATCGAATCTCTCTTCTCTCTAA
CATCTCATGGTTCACAGAATTGCCCTCAGAATCACAGAATGCCAACAGAATCACAGAAATCAACCTCTGA
Protein sequenceShow/hide protein sequence
MRALRNAVVTHKKPNPQKLKQRKAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNN
LVIKLFPLYLYFHSFSFTSSEDDHHGFIDHRISLLSNISWFTELPSESQNANRITEINL