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CsGy3G000013 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G000013
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotransposon protein
Genome locationGy14Chr3:37315..37754
RNA-Seq ExpressionCsGy3G000013
SyntenyCsGy3G000013
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051823.1 retrotransposon protein [Cucumis melo var. makuwa]5.18e-1858.23Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRS-RAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSNV   Y  FA+   NDM+F T+YSQRLD+SP+E+M TR+  A D  N SS SK KW GQ++E+  I+RNVIEYD E
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRS-RAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]6.09e-2465.82Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW GQ++ET  I+ N IEY N+
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]4.53e-1956.96Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSN   GYEGF++DDGNDME P MYSQ +D+  D+IM TR  R+ + R  SS SKRK  GQ++ET  I+RNV+E+ N+
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

KAA0061395.1 retrotransposon protein [Cucumis melo var. makuwa]1.19e-1760Show/hide
Query:  VGSNVLGGYEGFAS-DDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        V SNV G YEG AS DDGN++E PTMYSQ LD+SP++IM TR  RA   RNASS+ KRK  GQS+E A ++ +V+EY N+
Subjt:  VGSNVLGGYEGFAS-DDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

KGN55579.1 hypothetical protein Csa_010509 [Cucumis sativus]4.12e-79100Show/hide
Query:  MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ
        MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ
Subjt:  MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ

Query:  SIETAHILRNVIEYDNE
        SIETAHILRNVIEYDNE
Subjt:  SIETAHILRNVIEYDNE

TrEMBL top hitse value%identityAlignment
A0A0A0L3I2 Uncharacterized protein1.99e-79100Show/hide
Query:  MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ
        MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ
Subjt:  MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQ

Query:  SIETAHILRNVIEYDNE
        SIETAHILRNVIEYDNE
Subjt:  SIETAHILRNVIEYDNE

A0A5A7U7C9 Retrotransposon protein2.51e-1858.23Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRS-RAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSNV   Y  FA+   NDM+F T+YSQRLD+SP+E+M TR+  A D  N SS SK KW GQ++E+  I+RNVIEYD E
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRS-RAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

A0A5A7UNI7 Retrotransposon protein2.95e-2465.82Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSNV+GGYEGF  +DGND+E P+MYSQ LD+S D+IM TR R A D RNASS+SKRKW GQ++ET  I+ N IEY N+
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSR-AGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

A0A5A7V469 Retrotransposon protein2.19e-1956.96Show/hide
Query:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        VGSN   GYEGF++DDGNDME P MYSQ +D+  D+IM TR  R+ + R  SS SKRK  GQ++ET  I+RNV+E+ N+
Subjt:  VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

A0A5D3CX17 Retrotransposon protein5.78e-1860Show/hide
Query:  VGSNVLGGYEGFAS-DDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE
        V SNV G YEG AS DDGN++E PTMYSQ LD+SP++IM TR  RA   RNASS+ KRK  GQS+E A ++ +V+EY N+
Subjt:  VGSNVLGGYEGFAS-DDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGTCTATGTGTTCCGCAACTAGACTTTAAAAACCGCGTTAGCAAAATTATGGTTGAGTTTCAATATAGAATTTGTAAAAGACAAACAAGAATTTCAGTCCACTC
TTACCGCGTCGGGTCCAATGTGCTTGGTGGGTACGAGGGATTTGCATCTGATGATGGCAACGATATGGAGTTTCCCACAATGTACAGTCAAAGACTAGACATATCACCTG
ACGAAATAATGGAGACACGATCCCGTGCAGGTGACAGAAGGAATGCTTCTAGCAAATCAAAGAGGAAATGGAGAGGACAGTCGATAGAAACTGCACACATACTTCGCAAT
GTCATTGAGTACGATAATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGTCTATGTGTTCCGCAACTAGACTTTAAAAACCGCGTTAGCAAAATTATGGTTGAGTTTCAATATAGAATTTGTAAAAGACAAACAAGAATTTCAGTCCACTC
TTACCGCGTCGGGTCCAATGTGCTTGGTGGGTACGAGGGATTTGCATCTGATGATGGCAACGATATGGAGTTTCCCACAATGTACAGTCAAAGACTAGACATATCACCTG
ACGAAATAATGGAGACACGATCCCGTGCAGGTGACAGAAGGAATGCTTCTAGCAAATCAAAGAGGAAATGGAGAGGACAGTCGATAGAAACTGCACACATACTTCGCAAT
GTCATTGAGTACGATAATGAGTAG
Protein sequenceShow/hide protein sequence
MFSLCVPQLDFKNRVSKIMVEFQYRICKRQTRISVHSYRVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWRGQSIETAHILRN
VIEYDNE