CuGenDBv2

Gene ID	CsGy3G002130
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	Gy14Chr3:1652621..1655281
RNA-Seq Expression	CsGy3G002130
Synteny	CsGy3G002130
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]

3.79e-124

98.06

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]

4.52e-116

92.72

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]

1.00e-129

100

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

1.26e-93

79.52

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL LERKDL SSSL    ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS
        LDLMLGIADLHTPEAV AAESAIIGN PVIPL CSSS    ESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKLKRS SR+ +CRS+S+ KGKS
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS

Query:  KKRPKIQVLS
         KRPKI  LS
Subjt:  KKRPKIQVLS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

4.88e-104

88.41

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLLYLERKDLSSSSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMD+K+NAEKYDIEALDGNES+VI+
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS-ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKR
        LDLMLGIADLHTPEAV AAESAIIGN PVIPLTCSSS ESESEESSDDSITS+ +NDDNEKSDDQ TD SNR SVKLKRSNSRKTSCRSKSKGK KS+KR
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS-ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKR

Query:  PKIQVLS
        PKI  LS
Subjt:  PKIQVLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

1.83e-124

98.06

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

A0A1S3BJW4 uncharacterized protein LOC103490838

2.19e-116

92.72

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

2.19e-116

92.72

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

2.39e-93

79.9

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Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL LERKDL SSS     ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSK
        LDLMLGIADLHTPEAV AAESAIIGN PVI L CSSS   ESESEESSDDSITSD+++DDNEKSD+Q TD  NRLSVKLKR  SRKT+CRS+SK KGKS 
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSK

Query:  KRPKIQVLS
        KRPKI  LS
Subjt:  KRPKIQVLS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

6.10e-94

79.52

Show/hide

Query:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRH SKDLL LERKDL SSSL    ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+
Subjt:  MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS
        LDLMLGIADLHTPEAV AAESAIIGN PVIPL CSSS    ESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKLKRS SR+ +CRS+S+ KGKS
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS----ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS

Query:  KKRPKIQVLS
         KRPKI  LS
Subjt:  KKRPKIQVLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

5.7e-22

45.03

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Query:  KDLLYLERKDLSSSSLGVFNESSLLVC---KKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLD
        KDLL LE K+ SSSS     +S+LL+C    K     +     KP   P  KS +LG++K FLGV++EANKK    S+ N E Y+IEAL GNESE+I++D
Subjt:  KDLLYLERKDLSSSSLGVFNESSLLVC---KKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLD

Query:  LMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS
        LMLG+ADL+TPEAV+AAE+AI G  P          +ES +SS D    D  + ++E  + +  +CS + S
Subjt:  LMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAAC
GTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAA
AGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTT
CATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGA
TAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAA
CAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA

mRNA sequence

Show/hide mRNA sequence

TATTGATTTAAAGTTAAAAATCACCGTAGTCCTTCATTTGTTTTTGGGCAGTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCA
GTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTT
GTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGAATCCTCACT
GCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGG
GAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGAC
CTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTC
AGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAAC
TCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTA
TCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGAT
TGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAG
GTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGT
TTTAAAAATGGCCCTTTTATATATATGTACGATGTAGCTTCAAATAAGTTAAATAGTTTAATTCTTAGTAAGAGAAGAAGGTTTTTTGGATGGTAAGAAGTGTTTATGTA
GCTCATGTTTGGGATTCATTTTAAAATGGTGTAATCACTTTTCTGTATTCAACATCGTTCCCTTAGAATTACTCAAACTCAATTTAACATTTGGTTTTCTACTTTTAGAT
GGATAAA

Protein sequence

Show/hide protein sequence

MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADL
HTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS

CsGy3G002130 (gene) of Cucumber (Gy14) v2.1 genome