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CsGy3G002700 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G002700
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationGy14Chr3:2137524..2138520
RNA-Seq ExpressionCsGy3G002700
SyntenyCsGy3G002700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]6.27e-87100Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_022154042.1 uncharacterized protein LOC111021396 [Momordica charantia]6.05e-2654.81Show/hide
Query:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKE
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  + Q       DQ    +++ N NI+H   +   IGI +LKGMK+   RL MEF MKE
Subjt:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKE

Query:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        K  +M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]6.10e-2448.87Show/hide
Query:  FFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE--------
        FFL LLF S+ LHACDA  L+   SS   S +     +S G  +   ++     K+N+ + + N    +GIE+LKGMK+   RL ME P+++        
Subjt:  FFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE--------

Query:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]9.11e-5476.15Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKNNNDNILHNKENIIGIEMLK-GMKRDGSRLVMEFPMKEKVM
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HS+SQGIW+   DQ E SF+++N+D + + KE I+GIEMLK GMK+ GSRLVMEFPMKEKV+
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKNNNDNILHNKENIIGIEMLK-GMKRDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]1.31e-5576.74Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMN
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HS+SQGIW+   DQ E SF+++N+D + + KE I+GIEMLKGMK+ GSRLVMEFPMKEKV+N
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQ-EGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMN

Query:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP
        SKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein3.04e-87100Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1DKL1 uncharacterized protein LOC1110213962.93e-2654.81Show/hide
Query:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKE
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  + Q       DQ    +++ N NI+H   +   IGI +LKGMK+   RL MEF MKE
Subjt:  MAMPYFFLILLFFSSTLHACDAS-RLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENI--IGIEMLKGMKRDGSRLVMEFPMKE

Query:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        K  +M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  K--VMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985212.03e-2250.37Show/hide
Query:  FLILLFFSSTLHACDASRLRFFQSSNFVS-RINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE--------
        FL LLF S+ LHACDA  L+   SS   S  I+    M Q         + S DK+ + N + + EN+ GIE+LKGMK+   RL ME P+++        
Subjt:  FLILLFFSSTLHACDASRLRFFQSSNFVS-RINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKE--------

Query:  --KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
          KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  --KVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6S7NRQ9 Uncharacterized protein5.93e-0936.23Show/hide
Query:  TLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIG-----IEMLKG------MKRDGS---------RLVMEFPM
        ++HACD+  L  F          ELH ++     I    EG   +N  +  + +KE+ +      ++M KG      + +DG+         RL ME   
Subjt:  TLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIG-----IEMLKG------MKRDGS---------RLVMEFPM

Query:  K---EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        K   EK+ NSK+N V ED+ VMDYAQPHRKPPIHN +P
Subjt:  K---EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

M1A0Y5 Uncharacterized protein4.14e-0960Show/hide
Query:  RDGSRLVMEFPM----KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEK
        R  SRL++E P+    +E+ +NS E E+ ED+VVMDYAQPHRKPPIHN K
Subjt:  RDGSRLVMEFPM----KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEK

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 13.9e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).2.8e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGAT
TAATGAACTGCATTCGATGTCTCAAGGGATTTGGAGTATAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTA
TTGGAATTGAAATGTTAAAGGGAATGAAGAGAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGAC
ATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGAT
TAATGAACTGCATTCGATGTCTCAAGGGATTTGGAGTATAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTA
TTGGAATTGAAATGTTAAAGGGAATGAAGAGAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGAC
ATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
Protein sequenceShow/hide protein sequence
MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSMSQGIWSINHDQEGSFDKNNNDNILHNKENIIGIEMLKGMKRDGSRLVMEFPMKEKVMNSKENEVGED
MVVMDYAQPHRKPPIHNEKP