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CsGy3G004540 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G004540
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPectin lyase-like superfamily protein
Genome locationGy14Chr3:3647607..3647822
RNA-Seq ExpressionCsGy3G004540
SyntenyCsGy3G004540
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065793.1 exopolygalacturonase-like [Cucumis melo var. makuwa]7.90e-4195.71Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQIKDVRYEGIRGSSNTQVAVDFECS+V PCQGIVLQDINLPFNGGGRTT+NCHNVRGSAFGHQLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

KAA0065794.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.10e-3587.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQI+DVRYEGIRGSSNTQVAVDFECS+V+PCQGIVLQDINL FNGGG++TS CHNV+GSAFG QLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

XP_016900599.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]7.90e-4195.71Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQIKDVRYEGIRGSSNTQVAVDFECS+V PCQGIVLQDINLPFNGGGRTT+NCHNVRGSAFGHQLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

XP_031738767.1 exopolygalacturonase [Cucumis sativus]3.49e-43100Show/hide
Query:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
Subjt:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]4.16e-3687.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQIKDVRYEGIRG+SNTQVAV+FECS++ PCQGIVLQDINLPFNGGG++TS CHNVRGSAFG QLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

TrEMBL top hitse value%identityAlignment
A0A0A0L660 Uncharacterized protein1.12e-3584.51Show/hide
Query:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        MVQIKDVRY+GI GSSNT VAVDFECS+V+PCQGIVLQDINL FNGGG+TTS CHNV+GSA G QLPPSCL
Subjt:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

A0A0A0L7H9 Uncharacterized protein1.69e-43100Show/hide
Query:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
Subjt:  MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

A0A1S4DX91 exopolygalacturonase-like3.82e-4195.71Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQIKDVRYEGIRGSSNTQVAVDFECS+V PCQGIVLQDINLPFNGGGRTT+NCHNVRGSAFGHQLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

A0A5D3B9J1 Exopolygalacturonase-like3.82e-4195.71Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQIKDVRYEGIRGSSNTQVAVDFECS+V PCQGIVLQDINLPFNGGGRTT+NCHNVRGSAFGHQLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

A0A5D3BB58 Exopolygalacturonase-like5.33e-3687.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        VQI+DVRYEGIRGSSNTQVAVDFECS+V+PCQGIVLQDINL FNGGG++TS CHNV+GSAFG QLPPSCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

SwissProt top hitse value%identityAlignment
P05117 Polygalacturonase-28.4e-1042.42Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLP
        VQ+K+V YE I+G+S T+VA+ F+CS   PC+GI++++INL    G  + + C NV  +   H  P
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLP

P35336 Polygalacturonase2.2e-1043.48Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSC
        VQ+K+V Y+ I+G+  + VA+ F+CS+  PCQGIVL+D++L   GG    + C+NV  S  G  + P C
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSC

P49063 Exopolygalacturonase clone GBGA4833.2e-0944.29Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNG-GGRTTSNCHNVRGSAFGHQLPPSC
        V++ DV  +GI+G+S T+VAV   CS+ VPC  I L DINL  NG  G   S C N++    G  +P +C
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNG-GGRTTSNCHNVRGSAFGHQLPPSC

Q02096 Polygalacturonase1.4e-0948.21Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNV
        V++ +V Y  IRG+S ++VAV F+CS+  PCQG ++ +INL  NGG  TT +C N+
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNV

Q94AJ5 Probable polygalacturonase At1g801701.4e-0940.85Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINL-PFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        + I+++ +  +RG+S ++ A+   CS+  PC+ I+LQDI+L P NG G T S C    GS+ G   PP CL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINL-PFNGGGRTTSNCHNVRGSAFGHQLPPSCL

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein2.7e-1147.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        V+I  V Y+ I+G+S TQ A+   CS+  PC GI LQDI L +N G   TS C N  G   G   P SCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

AT1G05660.1 Pectin lyase-like superfamily protein7.0e-1247.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        V+I  V Y+ I+G+S TQ A+   CS+  PC GI LQDI L +N G   TS C N  G + G   P SCL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

AT1G65570.1 Pectin lyase-like superfamily protein1.2e-1147.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        ++I DV Y GI G+S T++A+  +CSE VPC GI +Q INL   G    TS C NV G   G   P  CL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL

AT2G15450.1 Pectin lyase-like superfamily protein2.4e-1244.44Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNG--GGRTTSNCHNVRGSAFGHQLPPSCL
        VQI++++ + I G+S  +VAV+ +CS++ PC+ + L DIN+  NG   G +TS C NV G A G   PP CL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNG--GGRTTSNCHNVRGSAFGHQLPPSCL

AT2G43890.1 Pectin lyase-like superfamily protein9.2e-1247.14Show/hide
Query:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL
        V+I  V Y  I+G+S TQ A+ F+CS   PCQ I L DI L FNG    TS C N++G   G  +P  CL
Subjt:  VQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAGATTAAGGATGTGAGATACGAAGGCATAAGGGGGAGTTCAAATACACAAGTGGCAGTAGATTTTGAATGCAGCGAAGTTGTTCCATGTCAAGGCATAGTGTT
ACAAGACATTAACCTTCCTTTTAATGGTGGTGGGAGGACAACTTCCAATTGTCATAATGTTAGAGGTTCTGCTTTTGGCCATCAATTACCTCCATCTTGCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAGATTAAGGATGTGAGATACGAAGGCATAAGGGGGAGTTCAAATACACAAGTGGCAGTAGATTTTGAATGCAGCGAAGTTGTTCCATGTCAAGGCATAGTGTT
ACAAGACATTAACCTTCCTTTTAATGGTGGTGGGAGGACAACTTCCAATTGTCATAATGTTAGAGGTTCTGCTTTTGGCCATCAATTACCTCCATCTTGCCTTTAG
Protein sequenceShow/hide protein sequence
MVQIKDVRYEGIRGSSNTQVAVDFECSEVVPCQGIVLQDINLPFNGGGRTTSNCHNVRGSAFGHQLPPSCL