CuGenDBv2

Gene ID	CsGy3G005540
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Genome location	Gy14Chr3:4474908..4475788
RNA-Seq Expression	CsGy3G005540
Synteny	CsGy3G005540
Gene Ontology terms	GO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process) GO:0009570 - chloroplast stroma (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025435.1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa]

1.55e-141

96.71

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_004152910.2 uncharacterized protein LOC101210146 [Cucumis sativus]

9.94e-147

100

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_008452345.1 PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]

1.88e-142

97.18

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_038903492.1 uncharacterized protein LOC120090072 isoform X1 [Benincasa hispida]

2.40e-127

87.68

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPIL+LPQS PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD AMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVAN
        AR     +  +
Subjt:  ARCRQAILVAN

XP_038903493.1 uncharacterized protein LOC120090072 isoform X2 [Benincasa hispida]

6.23e-129

90.34

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPIL+LPQS PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD AMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAI
        ARC   I
Subjt:  ARCRQAI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6D8 Uncharacterized protein

4.81e-147

100

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A1S3BT06 uncharacterized protein LOC103493403

9.10e-143

97.18

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A5D3C0F1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1

7.48e-142

96.71

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1EVI2 uncharacterized protein LOC111438454

4.36e-125

84.98

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MA  HLH L  PNP+LLLP+S P+FT PLQIT KR LS+KC+S+ SESDPNFPSP+P+FGALNQPE+FPIEKRRRS+I+RQR+PS +I KPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1JD53 uncharacterized protein LOC111483306

3.07e-125

84.51

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Query:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MA  HLH L  PNP+LLLPQS P+FT PLQIT KR LS+KC+S+ SESDPNFPSPDP+FGALNQPE+FP+EKRRRS+I+RQR+PS EI KPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAV+DETL++RL QAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G51100.1 unknown protein

1.1e-60

66.02

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Query:  LSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFP-SPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEIS
        LS+ N  + +P    SF   ++ T+K   S KC+S     D     +P P        E FPIEKRRRS+I+R R     I KPEPPNFEIGWKRTKEI+
Subjt:  LSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFP-SPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEIS

Query:  VEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAI
        +EKP G++IMDFLEK E LM REFGS ELLAK GEIVAERAREEAE+LRD+GKVEERMVTELFRVLKLMEMDLAMVKA+VKDETLS+R+ QA+ARCRQAI
Subjt:  VEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAI

Query:  LVANSF
        LVANSF
Subjt:  LVANSF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCTCCCTCAATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCT
CTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCCCAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAA
GAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCGGAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAGGAGATCAGTGTTGAGAAG
CCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGAGAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAG
GGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAATGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGA
AGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCAAGGTGTAGACAAGCTATACTTGTTGCTAATTCTTTTTGA

mRNA sequence

Show/hide mRNA sequence

GAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCTCCCTCAATCCCATCCC
TCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCCCAGATCCCAACTTCGG
CGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCGGAGCCACCCAACTTCG
AAATCGGATGGAAAAGAACGAAGGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGAGAGGGAATTTGGGTCG
ACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAATGGTAACAGAGCTTTT
TAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCAAGGTGTAGACAAGCTA
TACTTGTTGCTAATTCTTTTTGAGTTATATAACAAATTGTTGAGGCAATTCATTTCTCTTTGTATAGTGTATCAGTCCATTTTTTTCACCCTAATTCAAATTTAGTTTAG
ATTCTGCTTTGAATCGTGTGGTTTGTCCCTAATACATATTTCCCTTCTTCCAACTATCTGTTTGTTTTAATACCTTTTTGTGGATTTCTTGTCGTTGCAAACAATAAGCA
G

Protein sequence

Show/hide protein sequence

MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEK
PIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF

CsGy3G005540 (gene) of Cucumber (Gy14) v2.1 genome