; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy3G011860 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G011860
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description50S ribosomal protein L28
Genome locationGy14Chr3:9057468..9058455
RNA-Seq ExpressionCsGy3G011860
SyntenyCsGy3G011860
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]1.19e-96100Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]2.13e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]1.14e-8087.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]7.66e-7986Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLIS + IS APLRP+LQPVARR+CPFTGKKAN+KNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]2.79e-8189.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAA VV GFTPA T SGVM  SSTKL F TKPNS+LGFLTSQL+GI+ISSNHSLISP+ IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein5.78e-97100Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic1.03e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L281.03e-9094Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic8.72e-7885.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS + IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic5.50e-8187.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISP+ IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L284.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic7.1e-4373.13Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGK
        MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGK
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGK

Query:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic1.7e-4474.59Show/hide
Query:  RTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K +S+L F+TSQLSG++ISS H + S A +S  P +PSLQPVARRICPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic5.8e-4569.66Show/hide
Query:  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL
        SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +      +   +APL+PSLQPVARRICPFTGKK+NK N VS SNHKTK+LQFVNL
Subjt:  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL

Query:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L282.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family5.0e-4473.13Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGK
        MT+S+  +   T  + +LGFLTSQLSG+RIS   S +I+  S+   P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGK
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHS-LISPASISTAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGK

Query:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGG
GTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTC
GTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
CTTCCCATTTTACAAAGATAAACTCAATCGGTAACAATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAA
ACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCGCTTCCATTTCTA
CTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAG
AAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGG
ACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTCAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTAT
TCCTGCTGTTTTTGCCTCTTCTTGTTGTTAGTCATCTGTTTATTTTTCATGGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGTCAATGAAGCTGAAAAAT
CCATCCTCTTTCCCTTCTGGGTTTTCTGAATGTTACATTTTCTTAGAAGTTCAGCTAAAATGATCTTACAATTTTCATAGAAAGCTATGAGAAGC
Protein sequenceShow/hide protein sequence
MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKV
WWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE