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CsGy3G012000 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G012000
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionSplicing factor subunit
Genome locationGy14Chr3:9143913..9148218
RNA-Seq ExpressionCsGy3G012000
SyntenyCsGy3G012000
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5465923.1 hypothetical protein F2P56_015885, partial [Juglans regia]5.23e-4688.37Show/hide
Query:  QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFF
        QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV +  L F  L + F
Subjt:  QASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFF

KAG6668613.1 hypothetical protein CIPAW_01G183100 [Carya illinoinensis]8.44e-46100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

XP_021911310.1 uncharacterized protein At4g14342-like [Carica papaya]2.22e-4696Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDT
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAENESIGRE YNFMQVDT
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDT

XP_035547884.1 uncharacterized protein At4g14342 isoform X2 [Juglans regia]3.03e-4698.63Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV

XP_041007928.1 uncharacterized protein At4g14342 isoform X4 [Juglans microcarpa x Juglans regia]8.69e-4697.26Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGREHYNFMQ+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV

TrEMBL top hitse value%identityAlignment
A0A1S3AX72 Splicing factor subunit6.34e-46100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

A0A2P5XWA9 Splicing factor subunit4.74e-4684.09Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFFP
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AENESIGRE YNFMQ   L   FL +F +FP
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFFP

A0A5D3D0R6 Splicing factor subunit6.34e-46100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

A0A6P9EK34 Splicing factor subunit1.47e-4698.63Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ+
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQV

A0A803R3K1 Uncharacterized protein9.68e-4890.8Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFF
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAENESIGRE YNFMQV    LLFLFLF+ F
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFF

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143422.2e-3493.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

Q56K13 Splicing factor 3B subunit 51.4e-2062.32Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

Q9BWJ5 Splicing factor 3B subunit 51.4e-2062.32Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

Q9LW64 Uncharacterized protein At3g233256.4e-3491.67Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

Q9VHI4 Splicing factor 3B subunit 54.8e-2166.18Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  R  +N M+
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 104.6e-3591.67Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 101.6e-3593.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAENESIGRE YNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTGAACAT
TCAACGCGATAGCTATGCATCATATGTTGGACACTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGGTTG
ATACATTGTCATTACTTTTTTTGTTTTTATTTGTCTTTTTCCCTTGCAAGTTAAAAAAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATAAGAAAACGTAGAATTTTGCGGTATCATATGTGACCTTTGCTCGTTCCGTAGTGAATTTAAGAATTGGGTCGCGCCATTTTTCTGCTCCCATCGCTTCTTCCCCAATT
CGAACATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCTGTG
AACATTCAACGCGATAGCTATGCATCATATGTTGGACACTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCA
GGTTGATACATTGTCATTACTTTTTTTGTTTTTATTTGTCTTTTTCCCTTGCAAGTTAAAAAAAAGTTGAGAATTGAAAAAGAACAAAAGGAAAAACGATTAAAGATGGG
TATTCTCTTCATACTTTTTTCAGGCCAACGATTGTTGAGGTTTCTGCATACATTCATTATACCTGTTCATTATTTACTTTCACCTGCCCTCCACCCATATAAAGTGTGCT
TCCTATTTTCATGTCCTAGTAATTTTAACTTTGATTGTTTGGTGAGTTGTTCCTTTCAATTTTTCGGTTTTTAGCTTCAGTGTGGCTTTTCTATCTTAACTCGCTAAGTA
GCTCAAGTAATTTCATTCTGCATAACATGCAGTGTCTAGAATAAAATGGTCCTACCACTTTTTAAATGTGGGGCTGTGCCCATCATGTAACTAGATTTCGTTCTTATCAA
GCGATGGAAAATTTCCTCATAGTTTCTCCTGGATCTCATTTACAACTTAATTAGATAAAGAAAGGTAACTCTTAACATCCTTTTTCATTTTTTGTTCCTTTTACAGAAAA
TGCTGTTACCTTGCGGCCTTCCTCCAGAAAGGGAAGATGATTGAGACTTGAGAAGTTATGAGGTCGTAATTAGAGTTGTAACACTCTGGATCGTTATGTGGGCTCAAAAA
ACTTTTTCTTTTGTTAGATGACTCTGCTACAAAGTGACTAATGGGAAATGCGAACTATTTTATCTTGTAATGCTCCTGTCTGATGAAGAATCAGTTTCCAATTAATTTAC
AGGACTCTCTACTGTAATCTATCATTCTCATCCTTTATTTCAAGTAAAAAATCTATTTCGGTCATAGTCTGGAGAACTCTTCCATTTGTTGATGTATAATTCTGCTTCAC
CTTGAATTAAGTGTTTTTGTTTTTTTGTCGACAAGAACATGAACTTAATTTGATAGCTATGGATGCTGGATTTGGTTCAGTCAGTTAATTATTGTTCTAAGTCGGTTTCA
CAATTTCTGGAATTAATCTATACCTACTGAGATTACTTGTAACAGGACCACAATGGAATTATGTGATACGTCCCTTGCTAATTAATACGAGTGGGTTGTCTTGTTTATAT
GGTCCTTGATAATGAAAAAATTCCCATGTTCAGCTTGGTATCGAAAGAGAGGAGGAGGACCATCAAGTCACTTGCCCACGCAACTGCTTCCAACTTTAACTTTGAGGAAG
CTTTTTAGCTTGGCAAGATGGTGTCTCTCCTAATCTAAAACTCTTGCCCCTCGGTTCTTTGATGTGCATCTACAAAATGGAAAGCAGATTCAAGTGAAGGGTCAACAAGA
CACATGTGGGTCCAGCATTGGCCTGTGCCAATTCGATACATCATTTAATGTCCAACTGGTTTCAACGTTTTATTTGTCCCTTCACTAACGAAAGCTACGGTTCATGTACT
GGAAAATGCAAGCACACATGCTATCAGTCTGACAAAGGTGATGTCCATTTCTTTGGATTCTGCTGTGAGGGAGGGACCAACCCCTCTCTGGTCCCTTAACTATCACTTGC
TGTCTTTGACTCCTCCATCATCACTTCATATGTAACTTTTCTCCCCTTGAATCTCAAAGCTTATGGGACAGATTGCAAAAGCCATAAGTGGTTGTTCCAATTACACCTTC
AAGCTTTCAAAAGCAACAATATGGTATATAAACTTGTACAAGTGTTAAAATTGGTCTCTCAAGCTTACAATAATCGTATTATCGTAAATATTAGATCCACAAGTGATAAA
AATTGAATTCACAAACTTATATCATCAAATACAACCAATTTTGAATAAGTTTGAGAATGTGTACGATTGACATGGTGTAACAAAAAAGTTCCATCCCCT
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQVDTLSLLFLFLFVFFPCKLKKS