CuGenDBv2

Gene ID	CsGy3G013060
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein RDM1
Genome location	Gy14Chr3:9811875..9816782
RNA-Seq Expression	CsGy3G013060
Synteny	CsGy3G013060
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049342.1 protein RDM1 [Cucumis melo var. makuwa]

3.03e-122

97.7

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

XP_004134127.1 protein RDM1 [Cucumis sativus]

2.59e-123

100

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

XP_008438640.1 PREDICTED: protein RDM1 [Cucumis melo]

1.50e-122

98.28

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

XP_022979547.1 protein RDM1-like [Cucurbita maxima]

1.97e-118

94.25

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

XP_038877941.1 protein RDM1 [Benincasa hispida]

6.87e-119

94.83

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8M0 Uncharacterized protein

1.26e-123

100

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

A0A1S3AWI8 protein RDM1

7.27e-123

98.28

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

A0A5D3D0B3 Protein RDM1

1.47e-122

97.7

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        Y+TNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

A0A6J1GV10 protein RDM1

1.92e-118

93.68

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

9.53e-119

94.25

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Query:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

4.9e-48

55.21

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Query:  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
        +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++W
Subjt:  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW

Query:  DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ
        DQ R G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

3.5e-49

55.21

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Query:  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
        +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++W
Subjt:  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW

Query:  DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ
        DQ R G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCC
TTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCAC
AACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGG
GATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGA

mRNA sequence

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TGGGTTGCTGCCTGCATTTAATCACATAATTTACAAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAG
AAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATG
TATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACC
TTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAG
CAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTC
CCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAGCATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCAT
AGTTCTTTTGTCACATTGCACTTCACTGTAAGGAGCTCCAGCATTGCTTCATCTGTCCATTGTTGCTATCTGTCTGTTCACTAGTTGACTGCATTTACTGTTGTAGCAAA
GAACGAATGTAAATCAATATTGAAGATGCATATTTATCTTACACTTCTTTCCTATCTGAGAATTACATTAC

Protein sequence

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MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
DQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL

CsGy3G013060 (gene) of Cucumber (Gy14) v2.1 genome