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CsGy3G013210 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G013210
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr3:9891613..9891968
RNA-Seq ExpressionCsGy3G013210
SyntenyCsGy3G013210
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650356.1 hypothetical protein Csa_011614 [Cucumis sativus]2.80e-6398.91Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGEFAAK
        MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGL EEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGEFAAK
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGEFAAK

KAG7028900.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]1.10e-4668.97Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+ALSLFHQ+KVENVEPNWITFVGLLYACSHGGLVEEG+RIFHS+ N+                        EALE++EAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +HG+TELGEFAAK
Subjt:  ACHVHGETELGEFAAK

XP_023538947.1 pentatricopeptide repeat-containing protein At4g14820 [Cucurbita pepo subsp. pepo]6.30e-4668.97Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+ALSLFHQ+KVENVEPNWITFVGLLYACSHGGLVEEG+RIFHS+ N+                        EALE++EAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +HG+TELGEFAAK
Subjt:  ACHVHGETELGEFAAK

XP_031738996.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820, partial [Cucumis sativus]3.40e-5176.92Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND-------------------------EALEMIEAMPFAPNAIIWGSLM
        MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGL EEGRRIFHSLTN+                         EALEMIEAMPFAPNAIIWGSLM
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND-------------------------EALEMIEAMPFAPNAIIWGSLM

Query:  AACHVHGETELGEFAAK
        AACHVHGETELGEFAAK
Subjt:  AACHVHGETELGEFAAK

XP_038902272.1 pentatricopeptide repeat-containing protein At4g14820 [Benincasa hispida]4.87e-4872.41Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD HSA+SLFHQ+KVENVEPNWITFVG+LYACSHGGLVEEGRRIFHS+TN+                        EALE+IEAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC VHGETELGEFAAK
Subjt:  ACHVHGETELGEFAAK

TrEMBL top hitse value%identityAlignment
A0A6J1C8N9 pentatricopeptide repeat-containing protein At4g148201.53e-4569.83Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+AL+LFHQ+K ENVEPNWITFVG+LYACSHGGLVEEGR+IFHS+ ND                        EALEMIEAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC V+GETELGEFAAK
Subjt:  ACHVHGETELGEFAAK

A0A6J1H7U5 pentatricopeptide repeat-containing protein At4g148203.05e-4668.97Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+ALSLFHQ+KVENVEPNWITFVGLLYACSHGGLVEEG+RIFHS+ N+                        EALE++EAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +HG+TELGEFAAK
Subjt:  ACHVHGETELGEFAAK

A0A6J1ICZ7 pentatricopeptide repeat-containing protein At4g14820-like isoform X28.29e-4567.24Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+ALSLFHQ+KVENVEPNWITFVGLLYACSHGGLV+EG+RIFHS+ N+                        EALE++EAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +H +TELGEFAAK
Subjt:  ACHVHGETELGEFAAK

A0A6J1IE29 pentatricopeptide repeat-containing protein At4g14820-like7.70e-4567.24Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+ALSLFHQ+KVENVEPNWITFVGLLYACSHGGLV+EG+RIFHS+ N+                        EALE++EAMPFAPNAIIWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +H +TELGEFAAK
Subjt:  ACHVHGETELGEFAAK

A0A7J7CRZ7 Pentatricopeptide repeat-containing protein1.28e-3759.48Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHGD H+AL LFH++K ENVEPN +TFVGLLYACSH GLVE GR+IF S+ N+                        EALE++E+MP APN +IWGSLMA
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC VHGE ELGEFAAK
Subjt:  ACHVHGETELGEFAAK

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148204.7e-2953.45Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHG+   ALSLF ++K ENVEPN +TFVG+LY CSH GLVEEG++IF S+T++                        EALE+IE+MP A N +IWGSLM+
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +HGE ELG+FAAK
Subjt:  ACHVHGETELGEFAAK

Q3E9N1 Pentatricopeptide repeat-containing protein At4g39952, mitochondrial1.8e-1738.18Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIF-----------------------HSLTNDEALEMIEAMPFAPNAIIWGSLMAA
        MHGDV SA++LF Q++  +V+P   TF+ LL AC+H GLVE+G+++F                        S   +EA   + +MPF+P+ +IWG+L+++
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIF-----------------------HSLTNDEALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELG
        C  HGE E+G
Subjt:  CHVHGETELG

Q56X05 Pentatricopeptide repeat-containing protein At1g061431.4e-1738.05Show/hide
Query:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA
        HG    AL +F ++++E+V+PN +TFV +  AC+H GLV+EGRRI+ S+ +D                        EALE+I  M F PNA+IWG+L+  
Subjt:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELGEFA
        C +H    + E A
Subjt:  CHVHGETELGEFA

Q9LUJ2 Pentatricopeptide repeat-containing protein At3g226903.1e-1736.21Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTN------------------------DEALEMIEAMPFAPNAIIWGSLMA
        M G+   A+ LF  +  + ++P+ + FVG L ACSHGGLV++G+ IF+S+                          +EA+++IE MP  PN +IW SL+A
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTN------------------------DEALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC V G  E+  +AA+
Subjt:  ACHVHGETELGEFAAK

Q9M4P3 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial1.4e-1738.26Show/hide
Query:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA
        HG+   AL LF ++    + P+WITFV +L AC+H GLV  G   F S+  D                        EAL++I +MPF P+A ++G+L+ A
Subjt:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELGEFAAK
        C VH   EL EFAA+
Subjt:  CHVHGETELGEFAAK

Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-1838.05Show/hide
Query:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA
        HG    AL +F ++++E+V+PN +TFV +  AC+H GLV+EGRRI+ S+ +D                        EALE+I  M F PNA+IWG+L+  
Subjt:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELGEFA
        C +H    + E A
Subjt:  CHVHGETELGEFA

AT3G22690.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885)2.2e-1836.21Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTN------------------------DEALEMIEAMPFAPNAIIWGSLMA
        M G+   A+ LF  +  + ++P+ + FVG L ACSHGGLV++G+ IF+S+                          +EA+++IE MP  PN +IW SL+A
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTN------------------------DEALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC V G  E+  +AA+
Subjt:  ACHVHGETELGEFAAK

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein3.3e-3053.45Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA
        MHG+   ALSLF ++K ENVEPN +TFVG+LY CSH GLVEEG++IF S+T++                        EALE+IE+MP A N +IWGSLM+
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMA

Query:  ACHVHGETELGEFAAK
        AC +HGE ELG+FAAK
Subjt:  ACHVHGETELGEFAAK

AT4G16835.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.0e-1838.26Show/hide
Query:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA
        HG+   AL LF ++    + P+WITFV +L AC+H GLV  G   F S+  D                        EAL++I +MPF P+A ++G+L+ A
Subjt:  HGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTND------------------------EALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELGEFAAK
        C VH   EL EFAA+
Subjt:  CHVHGETELGEFAAK

AT4G39952.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-1838.18Show/hide
Query:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIF-----------------------HSLTNDEALEMIEAMPFAPNAIIWGSLMAA
        MHGDV SA++LF Q++  +V+P   TF+ LL AC+H GLVE+G+++F                        S   +EA   + +MPF+P+ +IWG+L+++
Subjt:  MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIF-----------------------HSLTNDEALEMIEAMPFAPNAIIWGSLMAA

Query:  CHVHGETELG
        C  HGE E+G
Subjt:  CHVHGETELG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGAGATGTTCACAGTGCTTTAAGCCTATTTCATCAAATAAAAGTTGAAAATGTGGAGCCTAATTGGATCACATTTGTAGGGTTGCTTTATGCTTGTAGCCATGG
AGGTCTAGTTGAGGAAGGCCGAAGAATATTTCATTCATTGACCAATGATGAAGCTCTTGAGATGATTGAGGCAATGCCCTTTGCTCCTAATGCTATCATTTGGGGGTCCC
TTATGGCTGCTTGTCATGTCCATGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGAGATGTTCACAGTGCTTTAAGCCTATTTCATCAAATAAAAGTTGAAAATGTGGAGCCTAATTGGATCACATTTGTAGGGTTGCTTTATGCTTGTAGCCATGG
AGGTCTAGTTGAGGAAGGCCGAAGAATATTTCATTCATTGACCAATGATGAAGCTCTTGAGATGATTGAGGCAATGCCCTTTGCTCCTAATGCTATCATTTGGGGGTCCC
TTATGGCTGCTTGTCATGTCCATGGTGAGACTGAGTTAGGAGAATTTGCTGCTAAGTAA
Protein sequenceShow/hide protein sequence
MHGDVHSALSLFHQIKVENVEPNWITFVGLLYACSHGGLVEEGRRIFHSLTNDEALEMIEAMPFAPNAIIWGSLMAACHVHGETELGEFAAK