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CsGy3G013215 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G013215
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr3:9892289..9892510
RNA-Seq ExpressionCsGy3G013215
SyntenyCsGy3G013215
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650357.1 hypothetical protein Csa_009765 [Cucumis sativus]2.25e-40100Show/hide
Query:  ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG
        ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG
Subjt:  ALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG

KAG6597439.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.40e-3285.14Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

KAG7028900.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]7.37e-3385.14Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

XP_022138165.1 pentatricopeptide repeat-containing protein At4g14820 [Momordica charantia]1.03e-3286.49Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALITMYASCG+MDLAWDLYEKISPK MVV TAMVSGL+K G+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

XP_031738996.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820, partial [Cucumis sativus]1.74e-41100Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG
        MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG

TrEMBL top hitse value%identityAlignment
A0A0A0L5H9 Uncharacterized protein1.28e-34100Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
        MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM

A0A6J1C8N9 pentatricopeptide repeat-containing protein At4g148204.96e-3386.49Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALITMYASCG+MDLAWDLYEKISPK MVV TAMVSGL+K G+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

A0A6J1H7U5 pentatricopeptide repeat-containing protein At4g148206.79e-3385.14Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALI MYASCG+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

A0A6J1ICZ7 pentatricopeptide repeat-containing protein At4g14820-like isoform X22.16e-3183.78Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALI MYAS G+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

A0A6J1IE29 pentatricopeptide repeat-containing protein At4g14820-like2.14e-3183.78Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        MDP L+SALI MYAS G+ DLAWDLYEKISPK MV+ TAMVSGLAKGG+IGDAR VFDQMVE DLICWSAMISG
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148205.7e-1449.32Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMIS
        MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ   +DL+CW+ MIS
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMIS

O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial3.6e-0841.18Show/hide
Query:  SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        ++++      G +D A +L+E++  + +V  TAMV GLAK GK+ +AR +FD M E ++I W+AMI+G
Subjt:  SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

Q683I9 Pentatricopeptide repeat-containing protein At3g628909.5e-0938.36Show/hide
Query:  DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        DP +R++L+ MY+SCG +  A  +++    K +    ++V+  AK G I DAR +FD+M E ++I WS +I+G
Subjt:  DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

Q9LSB8 Putative pentatricopeptide repeat-containing protein At3g159301.6e-0839.44Show/hide
Query:  RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG
        RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM V D I W+ MI G
Subjt:  RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG

Q9LXF2 Pentatricopeptide repeat-containing protein At5g153001.6e-0837.14Show/hide
Query:  LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG
        +++ALI  +A+CG + +A +L++  +  + V  ++M SG AK GKI +A  +FD+M  +D + W+ MI+G
Subjt:  LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG

Arabidopsis top hitse value%identityAlignment
AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein2.6e-0941.18Show/hide
Query:  SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        ++++      G +D A +L+E++  + +V  TAMV GLAK GK+ +AR +FD M E ++I W+AMI+G
Subjt:  SALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0939.44Show/hide
Query:  RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG
        RL +AL+  YA+CG MD+A  ++  +  + ++  T++V G  + G +  AR  FDQM V D I W+ MI G
Subjt:  RLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein6.7e-1038.36Show/hide
Query:  DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG
        DP +R++L+ MY+SCG +  A  +++    K +    ++V+  AK G I DAR +FD+M E ++I WS +I+G
Subjt:  DPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVE-DLICWSAMISG

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-1549.32Show/hide
Query:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMIS
        MD  L +AL+TMYA  G MD+A + + K+S + + V TAMVSG +K G++ DA+ +FDQ   +DL+CW+ MIS
Subjt:  MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMIS

AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0937.14Show/hide
Query:  LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG
        +++ALI  +A+CG + +A +L++  +  + V  ++M SG AK GKI +A  +FD+M  +D + W+ MI+G
Subjt:  LRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQM-VEDLICWSAMISG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTT
GACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGAT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCGCTTACGAAGTGCTCTCATCACGATGTATGCAAGCTGTGGCGCCATGGACTTGGCTTGGGATTTGTATGAAAAGATTTCCCCTAAATACATGGTTGTCTT
GACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGAAAAATTGGAGATGCTCGCAATGTCTTTGATCAAATGGTGGAGGACTTGATATGTTGGAGTGCAATGATTTCTGGAT
AG
Protein sequenceShow/hide protein sequence
MDPRLRSALITMYASCGAMDLAWDLYEKISPKYMVVLTAMVSGLAKGGKIGDARNVFDQMVEDLICWSAMISG