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CsGy3G013485 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G013485
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDEAD-box ATP-dependent RNA helicase 58, chloroplastic
Genome locationGy14Chr3:10079264..10079866
RNA-Seq ExpressionCsGy3G013485
SyntenyCsGy3G013485
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438702.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis melo]2.86e-7194.26Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSLKNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

XP_011650984.1 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativus]5.12e-7598.36Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

XP_031738176.1 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis sativus]1.26e-7498.36Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

XP_031738177.1 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativus]1.12e-7498.36Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

XP_031738178.1 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativus]5.82e-7598.36Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

TrEMBL top hitse value%identityAlignment
A0A0A0L5M9 Uncharacterized protein2.48e-7598.36Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

A0A1S3AX19 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X11.39e-7194.26Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAATFLPTTKFPPPWLLLSSER FPVHLSFQLPNFINTNGPIYSTSK RPLQAL+SSSSLKNVAESNFE STLREICNG VPEHILRRTEEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

A0A6J1C9C7 DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X12.48e-5578.69Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAAT LPTTK PPPWLLLSSER  PV+ S QLP F N+NGP+ STSK RP  A  SS SL NV +SNFEASTLREIC+GHVP+HILRR EEIGFVAPTDV
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

A0A6J1EZV7 DEAD-box ATP-dependent RNA helicase 58, chloroplastic2.24e-4871.31Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAAT LP+TK PPPWL +SSER +P++L    P  IN NGPI ST K RP +A +SSSSL N  +SNFEAS+LREICNG+VP+HIL R EEIGFVAPT V
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSGRDCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

A0A6J1I860 DEAD-box ATP-dependent RNA helicase 58, chloroplastic2.51e-4570.49Show/hide
Query:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV
        MAAT LP+TK PPP L +SSER  PV+L    P  IN+NGPI ST K RP +A +SSSS  N  +SNFEASTLREICNG+VP+HIL R EEIGFVAPT V
Subjt:  MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDV

Query:  QRQALPVLFSGRDCVLHAQVKS
        QRQALPVLFSG+DCVLHAQ  S
Subjt:  QRQALPVLFSGRDCVLHAQVKS

SwissProt top hitse value%identityAlignment
Q0JFN7 DEAD-box ATP-dependent RNA helicase 58, chloroplastic1.1e-1566.04Show/hide
Query:  ASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS
        A+TLRE+C G VPEH+L+R EE+G+V PT+VQ Q+LPVL SG+DC+LHAQ  S
Subjt:  ASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS

Q3E9C3 DEAD-box ATP-dependent RNA helicase 58, chloroplastic3.4e-1753.76Show/hide
Query:  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS
        +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R EEIGFV PTD+QR+ALP LF+GRDC+LHAQ  S
Subjt:  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS

Q84TG1 DEAD-box ATP-dependent RNA helicase 572.6e-0445.83Show/hide
Query:  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC
        +F   + R  C G    +ILR   E+GF  PT +QRQA+P+L SGR+C
Subjt:  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC

Arabidopsis top hitse value%identityAlignment
AT3G09720.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.8e-0545.83Show/hide
Query:  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC
        +F   + R  C G    +ILR   E+GF  PT +QRQA+P+L SGR+C
Subjt:  NFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDC

AT5G19210.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.4e-1853.76Show/hide
Query:  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS
        +STS  R L++  SS   +L+ VAE++ E             TLR+IC G VPEHIL R EEIGFV PTD+QR+ALP LF+GRDC+LHAQ  S
Subjt:  YSTSKSRPLQALLSSS--SLKNVAESNFEAS-----------TLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQVKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAA
TACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCC
GGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCG
GGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAACAGGTTCTGGGAAGACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAACCTTTCTTCCCACTACCAAATTCCCTCCTCCTTGGCTGCTCCTCTCATCTGAAAGGTCTTTTCCCGTTCATTTATCCTTTCAATTACCAAATTTTATCAA
TACCAATGGACCCATCTACTCCACCTCAAAATCTAGGCCTCTGCAAGCCCTTCTGAGCTCTTCTTCTTTAAAGAACGTAGCTGAATCCAATTTCGAGGCTTCCACTCTCC
GGGAAATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGAACTGAGGAAATTGGATTTGTTGCCCCAACTGATGTGCAGAGGCAAGCTCTCCCAGTTTTGTTTTCG
GGTCGGGATTGTGTGCTTCATGCGCAGGTCAAGTCTATGTATATAAAACAGGTTCTGGGAAGACACTGA
Protein sequenceShow/hide protein sequence
MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFS
GRDCVLHAQVKSMYIKQVLGRH