CuGenDBv2

Gene ID	CsGy3G014530
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	40S ribosomal protein S21
Genome location	Gy14Chr3:10736338..10739143
RNA-Seq Expression	CsGy3G014530
Synteny	CsGy3G014530
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

2.74e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]

2.74e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_008246212.1 PREDICTED: 40S ribosomal protein S21-2-like [Prunus mume]

5.92e-36

92.31

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVL
        MQNEEG+ITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCG++RAQV +L
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVL

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

2.74e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]

7.86e-36

98.36

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHD3 40S ribosomal protein S21

1.33e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A0A0L7W3 40S ribosomal protein S21

1.33e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A1S4DSM1 40S ribosomal protein S21

1.33e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A5D3CXC9 40S ribosomal protein S21

1.33e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A6J1GFE6 40S ribosomal protein S21

1.33e-36

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

1.3e-23

78.69

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q3E902 40S ribosomal protein S21-2

4.3e-27

88.52

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q41852 40S ribosomal protein S21

2.9e-23

78.69

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9M337 40S ribosomal protein S21-1

1.8e-25

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9SMI2 40S ribosomal protein S21

6.0e-21

72.13

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

1.3e-26

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT3G53890.2 Ribosomal protein S21e

1.3e-26

81.97

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT5G27700.1 Ribosomal protein S21e

3.0e-28

88.52

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGCCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGG
GCATTTGGATGAGAATGGCATCTACACTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGTGATTGTCCTTCCCCTCTATTTCTCTCCTTGTTGTT
GGGTTTGTACCGAGAGGATGCAGTTTTTAATATGTGATATATTTGAGCATTGA

mRNA sequence

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GGTCCAAATGATGTTGAAAAGTGTATTTTATAAATTGATATTTGATAATATTCAATGAAATCAATATTATTTTTTTAAAGTTAAAATATGCAAATAATCCAAAGATATAT
TTAGGCTTAGGGTTTGTCTTCTAAATTTTAGGGTTTCTTCACCACGCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGTTTCATTCACTTATCAA
GATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGCCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTG
GGCATTTGGATGAGAATGGCATCTACACTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGTGATTGTCCTTCCCCTCTATTTCTCTCCTTGTTGT
TGGGTTTGTACCGAGAGGATGCAGTTTTTAATATGTGATATATTTGAGCATTGACTTGGAACGAGGCATTTTATATTTACTCTGTCTTGTTGCACACTTAAAACTAATTT
TTATGCTCTTTGTTGCGTAGAAAGCGTGGTTTAAGAACGATGCATTGAACTTGGTTATGATTGATTCCGTCGGTATTTGACTTTAGTTCTTCTAGTAAAGGGGGTGCATT
TGAGAATGACTTATTCTTCTTGGCCATTTGATTCTCTGCTGGCTACTGGCTGTGTTTTTATATATAATAACAAACAGGTTAATTCAATCTTCTGTGATTCCTGTTGCCTG
ATATATTATGAAGCACCGTTTTATGGACGGCTGTAGACTGTAGTTAATTGAAACTAATCACGACTAATAAAATAAAGAATATGATAAATTTAGAGTTGGACTAAATCATA
GCCTTACGAAAGAAATCTTAAACATTTATAAACTACAATCTATAGACAGTAATTGAAAAGTACTAGATGAAACTTGGAAGTGAAAGAAAATGATAAGAAAGGGTAGAAGT
TTGCATAAATGAGTCTCCAAAGGGTTTCTCCTCCTGCCTCTGCCCTCTTGCTTTCTCTTGAATGGTGGAAGAAGCCATTGTAGATTTATAATCAAGAGTTTAATACTAAA
GCATGGCCTGCCTAGAAAAGAAATCTCAAACATAGCTAAAGTACAGACTATAGGCAATATAGAAATTCACTGATGGGAAATGAAAGAGTGTGAAGGAAGGGTAGAAGCCT
CGAAATGAGTCTTGAAAGACCTTTGCCATTTGCCTTTGTCTTCTAACTTCACTTTGAAGGGTGATAGAAGTCATTGTAGTGTACAAAATTTTCATGTCCATAATCCATTA
TCTTGTTATTTCTTTCCTCATACTCTGGAATCTGAGTTGAAGCCGTACAAAATTTTCCTGTTCTTTTCACTGTGGTGTTGATGCTGCTGATTTTGGCCATGTAGCTGTCT
AGAATCTTGCTGTATAGTTCAATCTCCATGCTTTGGAATCTGGCCTGATGGGGATGTTTGAGGCTTCAGTTGATATGATTTGATGTTTCCTATCATAGCTTGAAGCATGT
CTTTTGCTGTTGCTTGAATATTTCACCTACTTGACTGGGTTTTACATATTCCATTGTATTGTCTGGCCTCATGGATGTTTGTCTTAATCCTCAGCTTTCAAGTTCTCTAT
CTATGGTGATCTTGATGTACTCATGGTGCTTTCTTATATTCTTTGTAGGGAGATGCTGACAGTGCACTGGATCGCCTCTGGCAGAAGAAGAAAGTTGAAGTGCGTCAACA
ATAGATGATTGTGCAGTTCTGGTTCATCTCTATATCAAAGTTTTCAAGTATAGAGATACACTTTTAAGATTTTTTGAACCACTCGTAGTTAAGTAGTTTCTTTTGACAAT
TTAAACTCGTTAGTTTCTTTAAATGCAAACTCAACTTCATTGAGTCTGGACAAGCAATGATGAGTCAAAGGAGGACCAAAACTAAGTTGAATGAAATACGTTGAAGTTCA
TTTTCCATTAAAAATATTGAGTCTCTCTCTCAATTTTGAGACAACTCTCGAGCCCTAATTCACTCACCATATCTTGCTTTTCTACTCCATTCCTCTCCCTCAACTAATTA
CTAACGCCTTTAATATTCGTAACCTTATTCCTAAACTTATTTGAGTGGTAATTATAATGCATATTTGGATTCTTTCTTCAACATTTTAAGAAGTTGGAAATGTTCATGAT
ATTGCAACTTTTGACATTACATGAATATTTAACCATGGTCCTTAACATTTAATCATAGTATTAACCATAGATAACATTTGAACTGCATATCTAAACTTAAACTTGCATCT
CAATTGCATTTTGTGTATAGTACTTGGGAACTGAAGCGTGATTTAGAAAAGAAAAAATAAAAGTGAGAGATGTGATTGAGAATGTTAAATAATGGAGTTGCGTGTGGAAC
TCTAGTATCTTTGAACATGTATTTGTCTGCTTTCGTAAGCATAAAACCTAGCATCACTTTCTAATTTCTATTACTAGTTGTTAAATGCAAATCTAATCTTTGATACAATT
ATGTCACATGGATTCAACTTTACCATATATTTTAATAAATGCCTCAAATATTTTTGTTTTTGTTTTTTTTCTTGTTCATGGAT

Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVLPLYFSPCCWVCTERMQFLICDIFEH

CsGy3G014530 (gene) of Cucumber (Gy14) v2.1 genome