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CsGy3G015415 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G015415
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPre-mRNA-processing factor 6
Genome locationGy14Chr3:11413245..11413568
RNA-Seq ExpressionCsGy3G015415
SyntenyCsGy3G015415
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0022607 - cellular component assembly (biological process)
GO:0051254 - positive regulation of RNA metabolic process (biological process)
GO:0140513 - nuclear protein-containing complex (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
InterPro domainsIPR027108 - Pre-mRNA-processing factor 6/Prp1/STA1
IPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052156.1 protein STABILIZED1 [Cucumis melo var. makuwa]2.73e-2487.04Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASG
        MVPC RCKTK+I AL K DHDTHL+AAVAK FWHYRKVDIARTWLNRAVILASG
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASG

KGN57203.1 hypothetical protein Csa_010859 [Cucumis sativus]1.01e-6097.96Show/hide
Query:  KTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLRRTSIKRLKQS
        +TIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQ+RNGKQFQRLRRTSIKRLKQS
Subjt:  KTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLRRTSIKRLKQS

PON43669.1 N-terminal acetyltransferase A, auxiliary subunit [Parasponia andersonii]1.62e-1957.95Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F                +++VLKR V+AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

RVX20083.1 Protein STABILIZED 1 [Vitis vinifera]1.24e-2056.82Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F                +++VL+R V AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

XP_038907061.1 protein STABILIZED1 [Benincasa hispida]1.62e-1957.95Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  VG F            +   +++VLKR + AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

TrEMBL top hitse value%identityAlignment
A0A0A0L5Z8 Uncharacterized protein4.88e-6197.96Show/hide
Query:  KTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLRRTSIKRLKQS
        +TIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQ+RNGKQFQRLRRTSIKRLKQS
Subjt:  KTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLRRTSIKRLKQS

A0A2P5B4G7 N-terminal acetyltransferase A, auxiliary subunit7.84e-2057.95Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F                +++VLKR V+AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

A0A438KFT4 Protein STABILIZED 15.98e-2156.82Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F                +++VL+R V AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

A0A5A7UD74 Protein STABILIZED11.32e-2487.04Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASG
        MVPC RCKTK+I AL K DHDTHL+AAVAK FWHYRKVDIARTWLNRAVILASG
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASG

B9RW28 Pre-mRNA splicing factor, putative7.84e-2057.95Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK
        MVP P+ KTK++ AL KCDHD H+IAAVAKLFWH RKVD ARTWLNRAV LA  +G F                +R+VLKR + AEPK
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPK

SwissProt top hitse value%identityAlignment
A1A5S1 Pre-mRNA-processing factor 61.6e-0940.48Show/hide
Query:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK
        P+ KTK++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F             +  V KR  +AEP+
Subjt:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK

O94906 Pre-mRNA-processing factor 63.6e-0939.29Show/hide
Query:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK
        P+ +TK++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F             +  V KR   AEP+
Subjt:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK

Q2KJJ0 Pre-mRNA-processing factor 61.3e-0940.48Show/hide
Query:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK
        P+ KTK++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F             R  V +R  +AEP+
Subjt:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK

Q91YR7 Pre-mRNA-processing factor 61.6e-0940.48Show/hide
Query:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK
        P+ KTK++ AL KC+HD H++ AVAKLFW  RK+  AR W +R V + S +G    F             +  V KR  +AEP+
Subjt:  PRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVG---VFTTNSNFSRVLTRIRRNVLKRYVDAEPK

Q9ZT71 Protein STABILIZED11.9e-1038.61Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLR
        M P PR KTK+I A+ KCD D H+  AVAKLFW  +KV+ AR W  RAV +   +G F                R+ V+ + V  EPK   +G+++Q + 
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLR

Query:  R
        +
Subjt:  R

Arabidopsis top hitse value%identityAlignment
AT4G03430.1 pre-mRNA splicing factor-related1.4e-1138.61Show/hide
Query:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLR
        M P PR KTK+I A+ KCD D H+  AVAKLFW  +KV+ AR W  RAV +   +G F                R+ V+ + V  EPK   +G+++Q + 
Subjt:  MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTT---NSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLR

Query:  R
        +
Subjt:  R


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACCTTGCCCACGATGTAAAACCAAGACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTAC
AGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGA
ATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGATGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAG
CAATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTACCTTGCCCACGATGTAAAACCAAGACCATTGTTGCACTTAACAAATGTGATCATGATACTCACCTTATTGCTGCTGTGGCCAAGTTGTTTTGGCATTAC
AGGAAGGTTGACATTGCTAGAACTTGGCTGAACAGGGCAGTAATTCTTGCTTCAGGTGTTGGTGTTTTTACTACAAATTCAAACTTCAGCAGGGTACTGACGAGA
ATCAGAAGAAACGTACTGAAGAGATATGTTGATGCAGAACCCAAACAGATGCGAAATGGCAAACAATTTCAAAGGCTGAGGAGAACTTCCATCAAACGACTGAAG
CAATCTTGA
Protein sequenceShow/hide protein sequence
MVPCPRCKTKTIVALNKCDHDTHLIAAVAKLFWHYRKVDIARTWLNRAVILASGVGVFTTNSNFSRVLTRIRRNVLKRYVDAEPKQMRNGKQFQRLRRTSIKRLK
QS