; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy3G016170 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G016170
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationGy14Chr3:11999387..12002438
RNA-Seq ExpressionCsGy3G016170
SyntenyCsGy3G016170
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]4.55e-12191.96Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSP------QGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIATSS       QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSP------QGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]7.51e-130100Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
        MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE

Query:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]2.74e-12292.46Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIATSS      PQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]1.04e-10581.73Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]1.15e-11487.44Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFT++PYHLPNPSL+F SKPKFII SQNPSES+KPISK VDDAP+ATSS      PQGFGSSS QST+TSKS+PK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein3.64e-130100Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
        MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE

Query:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic1.33e-12292.46Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIATSS      PQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS------PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 22.20e-12191.96Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSP------QGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIATSS       QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSP------QGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic1.02e-10581.73Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic1.69e-10480.71Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA24.1e-4354.55Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII
        MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    SS  G G  SP S+S+     S +T  + K KGKR+   + 
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation22.9e-4454.55Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII
        MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    SS  G G  SP S+S+     S +T  + K KGKR+   + 
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATC
TCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCA
CGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAA
CAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTT
ACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTC
AGAATGAGAAAATAAAAGATGAAAAATCATAA
mRNA sequenceShow/hide mRNA sequence
AGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAATTTAGGAAGTGAAGTTTGAAGGGAACA
ATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCT
TCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTG
CGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATT
ATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCT
TGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCG
TTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTAATCCTTTTTGCTCGATGCTTTGT
ATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATTTTTTGAGCTCGAAAGCAAATG
AGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGATAGATTACTTCTGTAATTATCTTA
AGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGCAAGTGAACCTTACTTGTCTTCCTTTCTAATCTGGTTCCTTTTTCCTTTCT
TTCTTCTTATGGCGTTTCCTTCTATTCTAGGATTTTCTTTTTCTGGGTAAAAAGGCAGATACCTCATCTTTTCCTTTGGCTCTTCCAAACTATAATGCCTTGGCCCAAAA
TTTGAGCAATGATTTCGGAATGGGAATTCAATATCTGATCGAACTCCCTCAATATTATTTCCATATAGCAACATGGGTCTTTTTCCTTTCAACATGCATTGCATGTTATG
TCCCAAACACTTTCTACAAAGAGATCACTCAACGTAGAATTTACTAAACATTTTAAAATTAAAAAACGAGGATGCATCATTTATAAAATGATGAAGCTTATTTAAGCTAT
TCTTTCATAGTTTAAGGAATCAGGAGTTTGTAATTTATATATAGTTTTGGTTCATTCACAATCTCTTGAACTCAACGTTACTACACAAAAACAAAAAAAAGTTACAAAAG
CTGAAGATCCTGTGG
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDE
QVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS