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CsGy3G019600 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G019600
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome locationGy14Chr3:15792594..15795033
RNA-Seq ExpressionCsGy3G019600
SyntenyCsGy3G019600
Gene Ontology termsGO:0042793 - plastid transcription (biological process)
GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR038958 - Protein plastid transcriptionally active 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]1.51e-10497.04Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]7.49e-116100Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]5.91e-11397.04Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]3.87e-10497.42Show/hide
Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]1.75e-10591.12Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        M+TPISTLSFASP LP RIE  PRISPA NFR PFQ+VARKQ++GE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LKQE+T
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
TrEMBL top hitse value%identityAlignment
A0A0A0L9J8 Uncharacterized protein3.63e-116100Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X12.86e-11397.04Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X21.87e-10497.42Show/hide
Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A5A7U3Y9 KH domain-containing protein7.31e-10597.04Show/hide
Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
A0A5D3CIV3 KH domain-containing protein5.08e-9596.77Show/hide
Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRIS ALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
SwissProt top hitse value%identityAlignment
Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 74.1e-4766.43Show/hide
Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGG+K
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Arabidopsis top hitse value%identityAlignment
AT5G24314.1 plastid transcriptionally active72.9e-4866.43Show/hide
Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGG+K
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
AT5G24314.2 plastid transcriptionally active74.6e-4662.84Show/hide
Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN
        N R  FQ         + +GRRVWRRR         LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ N
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN

Query:  RDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        RDEYGG+KKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  RDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTCCAATCTCAACACTCTCCTTTGCTTCCCCTTCATTGCCGCTCAGGATTGAGGCGAATCCCCGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGTT
GGTCGCTAGAAAACAGAAAAGTGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCAT
TCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATTGAAAGACTATTATTATCAGAGGACAATCGCTTTGATTTTGTGAATGAGGTT
GCAGCTGAGGCTAAGGAATATGTTGAGAGCAACCGCGATGAATATGGGGGTACCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCG
GCCAGATGCTTATGCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTGAAACAAGAATTTACTTAA
mRNA sequenceShow/hide mRNA sequence
TTCGAGGATATGGGTTATTTATCAAAAAAGCGAGAGTTTTGGGAGAGCTCGCGTGACGAAAGTAATAACATCATTCGAAAATGAAGATAGGACAGCCATGGCTACTCCAA
TCTCAACACTCTCCTTTGCTTCCCCTTCATTGCCGCTCAGGATTGAGGCGAATCCCCGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGTTGGTCGCTAGAAAA
CAGAAAAGTGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACA
GGTAAGGAGGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATTGAAAGACTATTATTATCAGAGGACAATCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTA
AGGAATATGTTGAGAGCAACCGCGATGAATATGGGGGTACCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCGGCCAGATGCTTAT
GCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTGAAACAAGAATTTACTTAACCTGATTACAAAATCCATTTTCTTATACAAACTGTCAATGCATTAATCTGATT
TTTCCAGTTTTCAAATGTTAGCTAGTGCCTACGTCTCTTCTGATTAAGAATTGTGCTTGCCTCATCCTCACGAGTTTTTTCTCTAACCAAATATTACCTCTTTAAACTCC
TACTTTTCTATTCGTTATGTTTCATCCAACATTCCCAATAGGAGGGAAGATTGTTATCGACCAACTAATGAAACCATTAGAAAGTTTCTTTTATGAACTCCATTTGTTGT
TTTCCATGGTATAAAGCATTTAAAAGGGCC
Protein sequenceShow/hide protein sequence
MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEV
AAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT