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CsGy3G020960 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G020960
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionCalcium-binding EF-hand family protein
Genome locationGy14Chr3:18716515..18716766
RNA-Seq ExpressionCsGy3G020960
SyntenyCsGy3G020960
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149790.1 probable calcium-binding protein CML28 [Cucumis sativus]1.37e-50100Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

XP_016902062.1 PREDICTED: polcalcin Bra n 2-like [Cucumis melo]1.55e-4796.39Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADSGVNSAD ERIFKRFDANGDGKISATELGDALN FGVSSEDAKRMMDAIDKDGDGYISFQEF DFAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

XP_022143412.1 polcalcin Bra n 2-like [Momordica charantia]2.27e-3882.14Show/hide
Query:  MADS-GVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADS GV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+IS  EF DFAKDNRALMKDFAKAF
Subjt:  MADS-GVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

XP_022948513.1 probable calcium-binding protein CML28 [Cucurbita moschata]3.52e-4489.16Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+ISFQEFF+FAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]8.32e-4387.95Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MA+SGV++AD ERIFKRFDANGDGKISATELGDALN FGVS+EDAKRMMDAIDKDGDG ISF+EF +FAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

TrEMBL top hitse value%identityAlignment
A0A0A0L775 Putative calcium-binding protein CML286.65e-51100Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

A0A1S4E1G1 polcalcin Bra n 2-like7.50e-4896.39Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADSGVNSAD ERIFKRFDANGDGKISATELGDALN FGVSSEDAKRMMDAIDKDGDGYISFQEF DFAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

A0A6J1CQR0 polcalcin Bra n 2-like1.10e-3882.14Show/hide
Query:  MADS-GVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MADS GV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+IS  EF DFAKDNRALMKDFAKAF
Subjt:  MADS-GVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

A0A6J1G9I0 probable calcium-binding protein CML281.71e-4489.16Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+ISFQEFF+FAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

A0A6J1KB11 probable calcium-binding protein CML281.71e-4489.16Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+ISFQEFF+FAKDNRALMKDFAKAF
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

SwissProt top hitse value%identityAlignment
P69198 Polcalcin Bra n 26.5e-2266.67Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL   G V+ +D KRMM  ID DGDGYIS+QEF DFA  NR LMKD AK F
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

P69199 Polcalcin Bra r 26.5e-2266.67Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL   G V+ +D KRMM  ID DGDGYIS+QEF DFA  NR LMKD AK F
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

Q39419 Polcalcin Bet v 46.1e-2060.98Show/hide
Query:  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        D   + A+ ERIFKRFDANGDGKISA ELG+AL   G ++ ++ K MM  ID DGDG+ISFQEF DF + NR L+KD AK F
Subjt:  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

Q84V36 Polcalcin Che a 36.1e-2060.98Show/hide
Query:  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        D+  + AD ERIFKRFD NGDGKIS++ELGDAL   G V+ ++ +RMM  ID DGDG+ISF EF DFA+ NR L+KD +K F
Subjt:  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

Q9SRP7 Probable calcium-binding protein CML282.2e-2267.86Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+    A+ +RIFK+FDANGDGKISA ELGDAL   G V+ ED KRMM  ID DGDGYIS+QEF DFA  NR LMKD AK F
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family1.2e-1040.51Show/hide
Query:  DLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQEFFDF---AKDNRALMKDFAKAF
        +LE +FK+FD NGDGKIS+ ELG  +   G  V  E+ ++ +  ID+ GDGYI+F+EF +      D   ++++   AF
Subjt:  DLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQEFFDF---AKDNRALMKDFAKAF

AT1G73630.1 EF hand calcium-binding protein family1.3e-0940Show/hide
Query:  DLERIFKRFDANGDGKISATELGDALNEFGVS--SEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMK
        +L+++F +FDANGDGKIS +ELG+     G S   E+  R++D ID D DG+I+ +EF    + + + ++
Subjt:  DLERIFKRFDANGDGKISATELGDALNEFGVS--SEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMK

AT3G03430.1 Calcium-binding EF-hand family protein1.6e-2367.86Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+    A+ +RIFK+FDANGDGKISA ELGDAL   G V+ ED KRMM  ID DGDGYIS+QEF DFA  NR LMKD AK F
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF

AT3G07490.1 ARF-GAP domain 117.7e-1038.55Show/hide
Query:  VNSADLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQEF---FDFAKDNRALMKDFAKAF
        ++ A+L RIF+ FD NGDGKI+  EL D+L   G  +  +D  +M++ ID +GDGY+  +EF   +    + R   +D  +AF
Subjt:  VNSADLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQEF---FDFAKDNRALMKDFAKAF

AT5G17480.1 pollen calcium-binding protein 11.6e-2063.1Show/hide
Query:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF
        MAD+    A+ +RIFK+FDANGDGKISA EL +AL   G V+++D KRMM  ID DGDG IS+QEF DFA  NR LMKD AK F
Subjt:  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGA
GTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCG
CTTTGATGAAGGATTTCGCCAAGGCGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGA
GTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCG
CTTTGATGAAGGATTTCGCCAAGGCGTTTTAG
Protein sequenceShow/hide protein sequence
MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF