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CsGy3G026185 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G026185
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerase
Genome locationGy14Chr3:26975487..26983861
RNA-Seq ExpressionCsGy3G026185
SyntenyCsGy3G026185
Gene Ontology termsGO:0006390 - mitochondrial transcription (biological process)
GO:0034245 - mitochondrial DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR002092 - DNA-directed RNA polymerase, phage-type
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8366501.1 hypothetical protein BUALT_Bualt17G0086600 [Buddleja alternifolia]6.91e-1855.17Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  +  N       NQPVRWTTPL L VVQP RQLG H  +TSLQVL+LQRETDKV+A+RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

KAG9133537.1 hypothetical protein Leryth_019450 [Lithospermum erythrorhizon]2.39e-1754.02Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRWTTPL L VVQP R+LG H+ +TSLQVL+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

KAG9133538.1 hypothetical protein Leryth_019450 [Lithospermum erythrorhizon]1.90e-1754.02Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRWTTPL L VVQP R+LG H+ +TSLQVL+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

KAG9133539.1 hypothetical protein Leryth_019450 [Lithospermum erythrorhizon]2.19e-1754.02Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRWTTPL L VVQP R+LG H+ +TSLQVL+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

XP_017411941.1 PREDICTED: DNA-directed RNA polymerase 1A [Vigna angularis]2.00e-1752.87Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  +  +       NQPVRW+TPL L VVQP R+LGSH  +TSLQ+LSLQRETDKV+ RRQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

TrEMBL top hitse value%identityAlignment
A0A061E977 DNA-directed RNA polymerase2.92e-1755.17Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRW TPL L VVQP RQLG H  +TSLQVL+LQRETDKV+A+RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

A0A061EA94 DNA-directed RNA polymerase2.94e-1755.17Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRW TPL L VVQP RQLG H  +TSLQVL+LQRETDKV+A+RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

A0A175YSG1 DNA-directed RNA polymerase2.93e-1755.17Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRW TPL L VVQP R+LG H  +TSLQVL+LQRETDKV+ARRQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

A0A2I0K1R5 DNA-directed RNA polymerase3.72e-1752.87Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V  +       NQPVRW TPL L VVQP RQLG H  +TSLQVL+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

A0A6J1B0Q7 DNA-directed RNA polymerase2.94e-1755.17Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  V       S  NQPVRW TPL L VVQP RQLG H  +TSLQVL+LQRETDKV+A+RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

SwissProt top hitse value%identityAlignment
Q8L6J2 DNA-directed RNA polymerase 2A (Fragment)3.6e-1469.23Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        N+PVRWTTPL L VVQP R++G H  +TSLQ+L+LQRET+KV+ +RQRTAFP
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

Q8L6J4 DNA-directed RNA polymerase 1A (Fragment)7.2e-1569.09Show/hide
Query:  SFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        +  N PVRWTTPL L VVQP R+LG H  +TSLQ+L+LQRETDKV+ +RQRTAFP
Subjt:  SFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial7.2e-1549.43Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  +       +  N PVRWTTPL L VVQP R+LG H  +TSLQ+L+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

Q8VWF8 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial3.6e-1469.23Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        N+PVRWTTPL L VVQP R++G H  +TSLQ+L+LQRET+KV+ +RQRTAFP
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

Q93Y94 DNA-directed RNA polymerase 1, mitochondrial7.2e-1549.43Show/hide
Query:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        T+T+   +F     +M  +  C  +       +  N PVRWTTPL L VVQP R+LG H  +TSLQ+L+LQRETDKV+ +RQRTAFP
Subjt:  TITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

Arabidopsis top hitse value%identityAlignment
AT1G68990.1 male gametophyte defective 31.0e-1166.67Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAF
        N  V WTTPL L VVQP R+ G H  +T+LQVL+L RETDKV+ARRQ TAF
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAF

AT1G68990.2 male gametophyte defective 31.0e-1166.67Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAF
        N  V WTTPL L VVQP R+ G H  +T+LQVL+L RETDKV+ARRQ TAF
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAF

AT2G24120.1 DNA/RNA polymerases superfamily protein1.9e-1063.46Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        N PVRW TPL L VVQP  +   H  RTSLQVL+LQRE + V  R+QRTAFP
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

AT5G15700.1 DNA/RNA polymerases superfamily protein1.4e-1367.31Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        N+ VRWTTPL L VVQP  Q+G+   +TSLQ LSLQ ETD+V+ RRQRTAFP
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP

AT5G15700.2 DNA/RNA polymerases superfamily protein1.4e-1367.31Show/hide
Query:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP
        N+ VRWTTPL L VVQP  Q+G+   +TSLQ LSLQ ETD+V+ RRQRTAFP
Subjt:  NQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLSLQRETDKVVARRQRTAFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCACTCCTCTTCGATTGCCAGTGGTGCAACCTGGCCAACAACTAGGAAGCCATGTTGTAAAGCTCTACTGAATTTGTGTAATTTATGTTTCTGTGTCTTGAACGG
TATACAAACTTGGACAATTACGTCAGAGAACAACATTTTCCTTGATGGTTCTCGTATGATGATGACTGTTGTCTCCTGCAAAATGGTAGGCCTAAACTTTGCAGGTAATA
GCTTCAGAAATCAGCCAGTTCGATGGACCACTCCTCTTCGATTGATAGTGGTGCAGCCTTGTCGGCAACTAGGAAGTCATTCTACCAGGACTTCCTTGCAAGTGTTATCT
CTACAACGAGAAACTGACAAGGTCGTGGCTAGACGTCAGAGAACAGCATTTCCCTTGATGGTTCTCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCACTCCTCTTCGATTGCCAGTGGTGCAACCTGGCCAACAACTAGGAAGCCATGTTGTAAAGCTCTACTGAATTTGTGTAATTTATGTTTCTGTGTCTTGAACGG
TATACAAACTTGGACAATTACGTCAGAGAACAACATTTTCCTTGATGGTTCTCGTATGATGATGACTGTTGTCTCCTGCAAAATGGTAGGCCTAAACTTTGCAGGTAATA
GCTTCAGAAATCAGCCAGTTCGATGGACCACTCCTCTTCGATTGATAGTGGTGCAGCCTTGTCGGCAACTAGGAAGTCATTCTACCAGGACTTCCTTGCAAGTGTTATCT
CTACAACGAGAAACTGACAAGGTCGTGGCTAGACGTCAGAGAACAGCATTTCCCTTGATGGTTCTCATATGA
Protein sequenceShow/hide protein sequence
MDHSSSIASGATWPTTRKPCCKALLNLCNLCFCVLNGIQTWTITSENNIFLDGSRMMMTVVSCKMVGLNFAGNSFRNQPVRWTTPLRLIVVQPCRQLGSHSTRTSLQVLS
LQRETDKVVARRQRTAFPLMVLI