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CsGy3G027360 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G027360
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRNA polymerase sigma factor sigD, chloroplastic
Genome locationGy14Chr3:28466234..28467172
RNA-Seq ExpressionCsGy3G027360
SyntenyCsGy3G027360
Gene Ontology termsGO:0071482 - cellular response to light stimulus (biological process)
GO:2000142 - regulation of DNA-templated transcription, initiation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016987 - sigma factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048391.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa]1.17e-9596.73Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAAVLAVEAAGEHVLVEA+GFSEDWSSKNVE+MEESC
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC

Query:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

XP_004149725.1 RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus]5.50e-99100Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC

Query:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

XP_008461821.1 PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo]1.34e-8696.43Show/hide
Query:  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRR
        SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAAVLAVEAAGEHVLVEA+GFSEDWSSKNVE+MEESCVGDGTVAWKKKRR
Subjt:  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRR

Query:  KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

XP_022982740.1 RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima]1.71e-7683.77Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN ISNDTLT PPP EAA VLAVEAA EHVLVEA   S+DW  KN+EKME+S
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES

Query:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        C GDG VAWKK+RRKRRKEVG  AEENW+ALSSGPLRPG+LS KEEAELCLCLK
Subjt:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

XP_038906215.1 RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]2.07e-8890.2Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
        MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N I+NDTLTLPPPPEAAVL VEAA EHVLV+A+GFSEDWS KN+E+ME SC
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC

Query:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
         GDGTVAWKKKRRKRRKEVG+KAEENW ALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

TrEMBL top hitse value%identityAlignment
A0A0A0L9T0 Uncharacterized protein2.66e-99100Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC

Query:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

A0A1S3CFL7 RNA polymerase sigma factor sigD, chloroplastic6.48e-8796.43Show/hide
Query:  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRR
        SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAAVLAVEAAGEHVLVEA+GFSEDWSSKNVE+MEESCVGDGTVAWKKKRR
Subjt:  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRR

Query:  KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  KRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

A0A5D3BP27 RNA polymerase sigma factor sigD5.65e-9696.73Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLGPN IS DTLTLPPPPEAAVLAVEAAGEHVLVEA+GFSEDWSSKNVE+MEESC
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESC

Query:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
Subjt:  VGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

A0A6J1FAN3 RNA polymerase sigma factor sigD, chloroplastic1.87e-7582.47Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN I+NDTLT PPP EAA VLAVEAA EHVLVEA   S+DWS KN+EKME+S
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES

Query:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        C G G VAWKK+RRKRRKEVG  AEENW+ALS+GPLRPG+LS KEEAELCLCLK
Subjt:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

A0A6J1J3P0 RNA polymerase sigma factor sigD, chloroplastic8.28e-7783.77Show/hide
Query:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES
        MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN ISNDTLT PPP EAA VLAVEAA EHVLVEA   S+DW  KN+EKME+S
Subjt:  MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAA-VLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEES

Query:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK
        C GDG VAWKK+RRKRRKEVG  AEENW+ALSSGPLRPG+LS KEEAELCLCLK
Subjt:  CVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTACCAGCAGCTTATGTTCATTACCTGCTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCA
TTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGACCCAACATTATCAGCAATGACACATTAACCCTTCCTCCGCCGCCGGAAGCGGCTGTTCTAGCGGTAGAAGCGGCGG
GAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGGTGATGGGACTGTAGCTTGGAAGAAA
AAGAGAAGGAAAAGGAGGAAAGAGGTAGGGGTGAAAGCTGAAGAAAATTGGATTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGA
GCTTTGTCTTTGTCTAAAGCTCTGCGTATCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTACCAGCAGCTTATGTTCATTACCTGCTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCA
TTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGACCCAACATTATCAGCAATGACACATTAACCCTTCCTCCGCCGCCGGAAGCGGCTGTTCTAGCGGTAGAAGCGGCGG
GAGAACATGTTCTGGTGGAGGCCAAAGGGTTTTCTGAAGATTGGAGCAGCAAAAATGTTGAGAAAATGGAGGAGAGTTGTGTGGGTGATGGGACTGTAGCTTGGAAGAAA
AAGAGAAGGAAAAGGAGGAAAGAGGTAGGGGTGAAAGCTGAAGAAAATTGGATTGCCTTGTCCAGTGGCCCCTTGAGACCTGGATATTTGAGCCCAAAAGAAGAAGCAGA
GCTTTGTCTTTGTCTAAAGCTCTGCGTATCTTAA
Protein sequenceShow/hide protein sequence
MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKK
KRRKRRKEVGVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKLCVS