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CsGy3G027610 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G027610
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionSm-like protein LSM7
Genome locationGy14Chr3:28691322..28695281
RNA-Seq ExpressionCsGy3G027610
SyntenyCsGy3G027610
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0005688 - U6 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017132 - Sm-like protein Lsm7
IPR044641 - Sm-like protein Lsm7/SmG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452671.1 hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis]8.07e-6496.97Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSP DGTDEIANPF+QP+GA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
XP_004149601.1 sm-like protein LSM7 [Cucumis sativus]2.40e-65100Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
XP_011625467.1 sm-like protein LSM7 [Amborella trichopoda]5.68e-6495.96Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
XP_022152570.1 sm-like protein LSM7 [Momordica charantia]8.59e-6497.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
XP_038903588.1 sm-like protein LSM7 [Benincasa hispida]3.42e-6598.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
TrEMBL top hitse value%identityAlignment
A0A0A0LD28 Sm domain-containing protein1.16e-65100Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
A0A1S3TGW6 sm-like protein LSM77.89e-6497.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
A0A2P5D7Z2 Sm-like protein Lsm7/snRNP-G7.89e-6497.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
A0A5A7TXR7 Sm-like protein LSM71.65e-6598.99Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
A0A6J1DI46 sm-like protein LSM74.16e-6497.98Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
SwissProt top hitse value%identityAlignment
O74499 U6 snRNA-associated Sm-like protein LSm79.8e-2554.26Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
        RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T   R LGL+V RGT ++L++P+DG++EI NPF+Q +
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Q54HF6 Probable U6 snRNA-associated Sm-like protein LSm76.8e-2657.78Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPF
        +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+ R LGL+VCRG++VM+V P +G + I NP+
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPF
Q9CQQ8 U6 snRNA-associated Sm-like protein LSm74.2e-2857.61Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ
Q9SI54 Sm-like protein LSM71.5e-4493.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
Q9UK45 U6 snRNA-associated Sm-like protein LSm71.1e-2857.29Show/hide
Query:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
        +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Subjt:  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein1.0e-4593.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
AT2G03870.2 Small nuclear ribonucleoprotein family protein1.0e-4593.62Show/hide
Query:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
        MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKTTDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Subjt:  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI
AT2G23930.1 probable small nuclear ribonucleoprotein G4.1e-1040Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD
AT2G23930.2 probable small nuclear ribonucleoprotein G5.0e-0838.57Show/hide
Query:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD
        +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G++V RG +++ V  ++
Subjt:  VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD
AT3G11500.1 Small nuclear ribonucleoprotein family protein9.1e-1037.33Show/hide
Query:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            D    +G++V RG +++ V  ++
Subjt:  DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGA
TATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATT
GTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGA
TATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATT
GTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG
Protein sequenceShow/hide protein sequence
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA