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CsGy3G032010 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G032010
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTRASH domain-containing protein
Genome locationGy14Chr3:31371667..31372410
RNA-Seq ExpressionCsGy3G032010
SyntenyCsGy3G032010
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000988 - Ribosomal protein L24e-related
IPR038630 - Ribosomal protein L24e/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2994624.1 probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea]2.43e-2984.51Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AEE LKAIKKIDK
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

KAE8651076.1 hypothetical protein Csa_002111 [Cucumis sativus]3.88e-7499.12Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQG
        FCRSK HKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQG
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQG

Query:  GTNQKQSKISPMEE
        GTNQKQSKISPMEE
Subjt:  GTNQKQSKISPMEE

KAF2300745.1 hypothetical protein GH714_015470 [Hevea brasiliensis]3.43e-2983.1Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

XP_022723957.1 probable ribosome biogenesis protein RLP24 [Durio zibethinus]2.95e-2980.82Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        FCRSKCHKNFKMKRNPRKVKWTKAY    + KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

XP_022858257.1 probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris]2.50e-2984.51Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AEE LKAIKKIDK
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

TrEMBL top hitse value%identityAlignment
A0A0A0LDW1 Uncharacterized protein3.57e-7899.15Show/hide
Query:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKD
        MMRGFCRSK HKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKD
Subjt:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKD

Query:  QSQGGTNQKQSKISPMEE
        QSQGGTNQKQSKISPMEE
Subjt:  QSQGGTNQKQSKISPMEE

A0A6A6LJU3 TRASH domain-containing protein1.66e-2983.1Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

A0A6J1D3M8 probable ribosome biogenesis protein RLP242.02e-2980Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN  EE L+AIKKIDK  AD
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

A0A6P5X8M0 probable ribosome biogenesis protein RLP241.43e-2980.82Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        FCRSKCHKNFKMKRNPRKVKWTKAY    + KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

A0A6P5Y965 probable ribosome biogenesis protein RLP24 isoform X21.96e-2977.22Show/hide
Query:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD
        M+  FCRSKCHKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Subjt:  MMRGFCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD

SwissProt top hitse value%identityAlignment
O22165 Probable ribosome biogenesis protein RLP249.2e-2275.36Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q3SZ12 Probable ribosome biogenesis protein RLP244.1e-1450.72Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FC+SKCHKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q6P6G7 Probable ribosome biogenesis protein RLP244.1e-1450.72Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FC+SKCHKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q86B05 Probable ribosome biogenesis protein RLP244.9e-1554.93Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFK+KRNPRK +WTKA+  + G   K++T D T EFE+KRNRP +YDR      + A+ ++ K
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Q99L28 Probable ribosome biogenesis protein RLP244.1e-1450.72Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FC+SKCHKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + + A+K++++
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

Arabidopsis top hitse value%identityAlignment
AT2G44860.1 Ribosomal protein L24e family protein6.6e-2375.36Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK

AT2G44860.2 Ribosomal protein L24e family protein6.6e-2375.36Show/hide
Query:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK
        FCRSKCHKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  L AIKKI K
Subjt:  FCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCGAGGATTTTGTCGATCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGA
TGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAG
ACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGATCAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAG
AGCAAAATCAGCCCAATGGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCGAGGATTTTGTCGATCAAAATGCCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGA
TGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAG
ACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGATCAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAG
AGCAAAATCAGCCCAATGGAAGAATGA
Protein sequenceShow/hide protein sequence
MMRGFCRSKCHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQ
SKISPMEE