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CsGy3G032440 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy3G032440
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationGy14Chr3:31746128..31747309
RNA-Seq ExpressionCsGy3G032440
SyntenyCsGy3G032440
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149201.1 replication protein A 14 kDa subunit B [Cucumis sativus]3.70e-70100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_008442847.1 PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo]3.43e-6695.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.64e-6491.51Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]4.52e-6492.45Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_038905423.1 replication protein A 14 kDa subunit B [Benincasa hispida]3.43e-6695.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+FGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

TrEMBL top hitse value%identityAlignment
A0A0A0LGP0 Uncharacterized protein6.41e-70100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A1S3B7E2 replication protein A 14 kDa subunit B1.66e-6695.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FK LFI
Subjt:  FKPLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like2.27e-6491.51Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like7.92e-6591.51Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQV SE NGV++GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like2.27e-6491.51Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SE NGV++GKSTD+NQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B8.5e-3565.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G V GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A5.2e-3261.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC  ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit2.7e-2851.89Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q   E  G++ G+STD +Q+T+KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC  ANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.7e-3361.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC  ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.7e-3361.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD QI V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC  ANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein6.1e-3665.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G V GKSTDD QI VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC  ANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAAGCAATGGAGTCGT
ATTTGGTAAATCAACAGATGACAACCAGATCACTGTCAAAGGTTCCCCACCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACCGACAAATCCATTC
GAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGTCTGTTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAAGCAATGGAGTCGT
ATTTGGTAAATCAACAGATGACAACCAGATCACTGTCAAAGGTTCCCCACCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACCGACAAATCCATTC
GAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGTCTGTTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI